PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_13544 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | MYB | ||||||||
Protein Properties | Length: 204aa MW: 23474.3 Da PI: 8.2117 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.3 | 1.7e-18 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd++l +++ ++G g+W+ a++ g++Rt+k+c++rw++yl PEQU_13544 15 RGPWTVEEDLILTNYISKHGEGRWNYLAKCAGLKRTGKSCRLRWLNYL 62 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.1 | 3.6e-17 | 68 | 111 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ PEQU_13544 68 RGNITAEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 111 7999******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.833 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.8E-31 | 13 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-14 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.0E-16 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-24 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.45E-11 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 24.423 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-15 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.7E-16 | 68 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-24 | 70 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.11E-11 | 72 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MEIEKQQSTA EELRRGPWTV EEDLILTNYI SKHGEGRWNY LAKCAGLKRT GKSCRLRWLN 60 YLRPDVRRGN ITAEEQLLIL ELHSRWGNRW SKIAQHLPGR TDNEIKNYWR TRLQKHANVL 120 EGMRALMGRP PWHGVSEGQS SLATSNSGGD LSNSSSTSNC YYNYLDERGE GCWPSKPEGW 180 LDFSPLPDFD SNMLAGFCQH NALY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-26 | 6 | 115 | 18 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020573454.1 | 1e-151 | myb-related protein 340-like | ||||
Swissprot | Q2QZJ8 | 1e-66 | JAMYB_ORYSJ; Transcription factor JAMYB | ||||
TrEMBL | A0A455LAB3 | 5e-75 | A0A455LAB3_9ASPA; Transcription factor MYB78-like protein | ||||
STRING | OGLUM07G26960.1 | 4e-67 | (Oryza glumipatula) | ||||
STRING | OS07T0688200-01 | 4e-67 | (Oryza sativa) | ||||
STRING | ONIVA07G26740.1 | 4e-67 | (Oryza nivara) | ||||
STRING | ORGLA07G0213800.1 | 4e-67 | (Oryza glaberrima) | ||||
STRING | OBART07G26990.1 | 4e-67 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68320.1 | 6e-65 | myb domain protein 62 |
Publications ? help Back to Top | |||
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