PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_13510 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | HB-PHD | ||||||||
Protein Properties | Length: 672aa MW: 77125.2 Da PI: 8.9299 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 34.2 | 4.5e-11 | 455 | 499 | 9 | 53 |
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 ++ +e L + F++n ps+ +e L+k+lg++ +++ WF+N R+ PEQU_13510 455 PDAIEKLRQIFHENELPSRPVKENLSKQLGISVEKIDKWFKNTRY 499 7889****************************************7 PP | |||||||
2 | PHD | 31.5 | 4e-11 | 218 | 271 | 1 | 51 |
SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSSTBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpegewlCeeCkek 51 +C+ C++ + ++++++lCd +C+ fH+kCl+++le+ + ++ wlC+ C++k PEQU_13510 218 FCAKCKSpeAFHDNDIILCDgNCNCGFHQKCLEPPLEKIPPGDQGWLCKVCNCK 271 699****66556********66***************8888888*******975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 2.06E-13 | 210 | 273 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 1.9E-11 | 214 | 272 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50016 | 10.585 | 216 | 271 | IPR019787 | Zinc finger, PHD-finger |
CDD | cd15504 | 4.35E-27 | 218 | 268 | No hit | No description |
Pfam | PF00628 | 1.3E-8 | 218 | 271 | IPR019787 | Zinc finger, PHD-finger |
SMART | SM00249 | 2.3E-6 | 218 | 269 | IPR001965 | Zinc finger, PHD-type |
PROSITE pattern | PS01359 | 0 | 219 | 268 | IPR019786 | Zinc finger, PHD-type, conserved site |
PROSITE profile | PS50071 | 12.163 | 444 | 504 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-11 | 446 | 510 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.4E-11 | 446 | 508 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-11 | 446 | 498 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.41E-10 | 447 | 508 | No hit | No description |
Pfam | PF00046 | 1.2E-8 | 455 | 499 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 672 aa Download sequence Send to blast |
MRVPEKKLIG YKSREYFSNE ENSKTVSMPR NPNGIKIVHN KRCYLTPAYR KKRACKRKNN 60 VNGKSIETLK KKFDRNIGKC ISSLKLTGRK SCFSVGKNSK NLAKSSEKNS VRRRRLKRRK 120 KNIVQDEVSR MQRRARYLLI KMKLEQNLID AYSADGWKGQ SREKIKPEKE LQRAQRQILK 180 FKLGIRDSIH QLDLLGSEGR IEDSVMHPDG SVFHEHIFCA KCKSPEAFHD NDIILCDGNC 240 NCGFHQKCLE PPLEKIPPGD QGWLCKVCNC KMEILDTINA HFGTCFTVNS SWEDIFKEAI 300 VGPDAEGACP NVVEDWPSDD SGDEDYCPDI TQEEFEQSFS DDACCSIDSI FASDASLNFI 360 SCLDSGESVD DITNYRRQRR DVDYKKLYDE MFGKEPNEGV EQSEDEDWGP YRKKKVRIGS 420 DIGITSADGE KDNHVTMALG DMFSCNKRSF FRIPPDAIEK LRQIFHENEL PSRPVKENLS 480 KQLGISVEKI DKWFKNTRYA AIKMKKEETT KHPDHRSDLS MVNEGQRGIS EPALSLDSSC 540 LLPLASIFHL PRHKKRIPRR DNLTYAAFPM KRQKVRSKLR NAARLTKHTV SRDGDLASLK 600 IAAIVPEEEQ VYLNEMQMIW VLERRLHQLK QQLVACKADN EVQVKNLSGE MAVIYVPVAE 660 IKQKSCCEII RS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Specifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By pathogen infection. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020589039.1 | 0.0 | pathogenesis-related homeodomain protein isoform X1 | ||||
Swissprot | P48785 | 1e-115 | PRH_ARATH; Pathogenesis-related homeodomain protein | ||||
TrEMBL | A0A2I0VNJ2 | 0.0 | A0A2I0VNJ2_9ASPA; Pathogenesis-related homeodomain protein | ||||
STRING | XP_008798084.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8550 | 22 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29940.1 | 1e-117 | pathogenesis related homeodomain protein A |
Publications ? help Back to Top | |||
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