PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_13401 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 253aa MW: 29715.9 Da PI: 9.919 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.5 | 3.1e-27 | 35 | 85 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien +nrqvt+skRr gilKKA+EL vLCda+v++i+fsstgkl +y+s PEQU_13401 35 KKIENPTNRQVTYSKRRVGILKKAKELTVLCDAQVSLIMFSSTGKLADYCS 85 68***********************************************96 PP | |||||||
2 | K-box | 76.3 | 8.2e-26 | 98 | 194 | 2 | 98 |
K-box 2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 q +g +l++a++e++q+ l+ L++ ++nL++e+R+++Ge+Le +++k+L+ Leq Le+sl+ +R +K++++ +q+++ +kk k+++e+ +aL ++l PEQU_13401 98 QVVTGMDLWNAQYERMQNTLKHLNEINQNLRKEIRRRKGEELEGMDIKQLRGLEQTLEESLRIVRHRKYHVIATQTDTYKKKLKSTRETYRALIHEL 194 5567889***********************************************************************************9999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.6E-40 | 27 | 86 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.385 | 27 | 87 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.88E-39 | 28 | 106 | No hit | No description |
SuperFamily | SSF55455 | 6.15E-36 | 28 | 120 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 29 | 83 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-27 | 29 | 49 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.3E-22 | 36 | 83 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-27 | 49 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-27 | 64 | 85 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.6E-17 | 109 | 194 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.509 | 110 | 200 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MSIYSRGRRR EGLRTEENRG EQGKREMGRG KIEIKKIENP TNRQVTYSKR RVGILKKAKE 60 LTVLCDAQVS LIMFSSTGKL ADYCSPSTDI KGIYERYQVV TGMDLWNAQY ERMQNTLKHL 120 NEINQNLRKE IRRRKGEELE GMDIKQLRGL EQTLEESLRI VRHRKYHVIA TQTDTYKKKL 180 KSTRETYRAL IHELDMKEEN PNYGFNVENQ SRIYENSIPM VNECPQMFSF RVVHPNQPNL 240 LGLGYESHDL SLA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-17 | 27 | 97 | 1 | 69 | MEF2C |
5f28_B | 4e-17 | 27 | 97 | 1 | 69 | MEF2C |
5f28_C | 4e-17 | 27 | 97 | 1 | 69 | MEF2C |
5f28_D | 4e-17 | 27 | 97 | 1 | 69 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the development of floral organs. Required for normal development of lodicules and stamens (whorls 2 and 3). May function as a heterodimer with MADS4. {ECO:0000269|PubMed:12506001, ECO:0000269|PubMed:12905025, ECO:0000269|PubMed:14558657}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY378149 | 0.0 | AY378149.1 Phalaenopsis equestris MADS box transcription factor (MADS2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020586439.1 | 0.0 | MADS-box transcription factor 16-like | ||||
Swissprot | Q944S9 | 5e-91 | MAD16_ORYSJ; MADS-box transcription factor 16 | ||||
TrEMBL | Q5XKT4 | 1e-168 | Q5XKT4_9ASPA; MADS box AP3-like protein 17 | ||||
TrEMBL | Q69BL3 | 1e-168 | Q69BL3_PHAEQ; MADS box transcription factor | ||||
STRING | GSMUA_Achr9P20950_001 | 1e-109 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5728 | 35 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 4e-65 | MIKC_MADS family protein |