PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_13371 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | LSD | ||||||||
Protein Properties | Length: 203aa MW: 21903.6 Da PI: 8.7862 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 25.8 | 1.8e-08 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr lL+Y +VRCa+C+t+ PEQU_13371 7 CSGCRSLLRYEGVTNNVRCAICNTI 31 ***********************97 PP | |||||||
2 | zf-LSD1 | 43.6 | 4.9e-14 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+ lL+Y rGA+sVRC++C+t+ PEQU_13371 46 CGGCHRLLMYARGATSVRCSCCNTI 70 ***********************97 PP | |||||||
3 | zf-LSD1 | 33.9 | 5.2e-11 | 114 | 138 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C +C+t+L YP GAp V+CalC+++ PEQU_13371 114 CAQCHTMLVYPHGAPCVKCALCNFI 138 ***********************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 4.2E-10 | 5 | 33 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 5.0E-6 | 7 | 31 | IPR005735 | Zinc finger, LSD1-type |
Gene3D | G3DSA:2.20.25.100 | 2.1E-4 | 22 | 58 | IPR023407 | Ribosomal protein S27e, zinc-binding domain |
TIGRFAMs | TIGR01053 | 4.6E-14 | 43 | 71 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.6E-12 | 46 | 70 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 9.4E-9 | 111 | 140 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.8E-10 | 114 | 138 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000303 | Biological Process | response to superoxide | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0002240 | Biological Process | response to molecule of oomycetes origin | ||||
GO:0009626 | Biological Process | plant-type hypersensitive response | ||||
GO:0009862 | Biological Process | systemic acquired resistance, salicylic acid mediated signaling pathway | ||||
GO:0010104 | Biological Process | regulation of ethylene-activated signaling pathway | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0010602 | Biological Process | regulation of 1-aminocyclopropane-1-carboxylate metabolic process | ||||
GO:0010618 | Biological Process | aerenchyma formation | ||||
GO:0043069 | Biological Process | negative regulation of programmed cell death |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MPGELVCSGC RSLLRYEGVT NNVRCAICNT ITPVFSQPQD AAQLVCGGCH RLLMYARGAT 60 SVRCSCCNTI NQARSVQLEI LKKVFRHLQT SLLAHNISIK SNAQKANQLA HVNCAQCHTM 120 LVYPHGAPCV KCALCNFITR VAVNSGMMPI QVNRPSGAAP SLASTSAPSP NSNNQTVVIE 180 NPMSIDQSGK LVLSLFFILI LQF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020586441.1 | 1e-109 | protein LSD1-like | ||||
Refseq | XP_020586442.1 | 1e-109 | protein LSD1-like | ||||
TrEMBL | A0A151TKM2 | 4e-55 | A0A151TKM2_CAJCA; Uncharacterized protein | ||||
TrEMBL | A0A200QBG7 | 3e-55 | A0A200QBG7_9MAGN; Zinc finger protein | ||||
STRING | Aquca_026_00333.1 | 4e-55 | (Aquilegia coerulea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1347 | 38 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.8 | 2e-45 | LSD family protein |