PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_13090

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

LBD

Protein Properties

Length: 102aa MW: 11110 Da PI: 9.3391

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_13090	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	116.3	1.9e-36	4	92	1	88
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C aCk+lrrkCa+ C++ap+f eq +++f ++hk+FGasnv+kll++lpe++r +a+ +++yeA ar+rdPvyG+v+++ +lqqq++ PEQU_13090 4 SCGACKFLRRKCADMCIFAPHFSYEQaAAHFSAIHKVFGASNVSKLLSHLPEQHRAAAAITVAYEALARVRDPVYGCVAHVIALQQQVS 92 6*********************9978*********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.44	3	102	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-34	4	92	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 102 aa Download sequence Send to blast
MASSCGACKF LRRKCADMCI FAPHFSYEQA AAHFSAIHKV FGASNVSKLL SHLPEQHRAA 60 AAITVAYEAL ARVRDPVYGC VAHVIALQQQ VSFKLGATKL IY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-31	2	91	9	97	LOB family transfactor Ramosa2.1
5ly0_B	5e-31	2	91	9	97	LOB family transfactor Ramosa2.1
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Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:17259263}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020590174.1	2e-60	LOB domain-containing protein 33-like
Swissprot	Q9LHS8	2e-45	LBD33_ARATH; LOB domain-containing protein 33
TrEMBL	A0A2I0AA91	9e-54	A0A2I0AA91_9ASPA; LOB domain-containing protein 33
STRING	XP_010543775.1	9e-48	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3346	37	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06080.1	9e-48	LOB domain-containing protein 33

Publications ? help Back to Top
Bargmann BO,Birnbaum KD,Brenner ED An undergraduate study of two transcription factors that promote lateral root formation. Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45 [PMID:24615800]