PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_12866

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

WOX

Protein Properties

Length: 191aa MW: 21677.7 Da PI: 8.7987

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_12866	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.9	2.3e-20	87	147	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +p++++++e + +l +++e++V++WFqNrRa+ k+ PEQU_12866 87 RQRWTPTPMQLQILETIFDQgNGTPTKQKIKEVTLELtkhgQISETNVYNWFQNRRARSKR 147 89***************99************************************97 PP
2	Wus_type_Homeobox	100.5	1.2e-32	86	149	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPtp Q++iLe+++++G tP+k++i+++t eL+++G+i+++NV++WFQNr+aR+++kq PEQU_12866 86 SRQRWTPTPMQLQILETIFDQGNGTPTKQKIKEVTLELTKHGQISETNVYNWFQNRRARSKRKQ 149 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.2E-17	79	152	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.28E-18	80	150	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.722	83	148	IPR001356	Homeobox domain
SMART	SM00389	2.3E-11	85	152	IPR001356	Homeobox domain
Pfam	PF00046	4.2E-18	87	147	IPR001356	Homeobox domain
CDD	cd00086	1.64E-12	87	149	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
YVKVMTDEQM EILRRQIAVY ATICEQLVEM HKAVSAQQDS LAGLKYNCSF GNVVMRLLLY 60 LFGPGMRFGS LYCDPLMTST THKLASRQRW TPTPMQLQIL ETIFDQGNGT PTKQKIKEVT 120 LELTKHGQIS ETNVYNWFQN RRARSKRKQS SAATSITESE ADTESESRND KRAKAETALS 180 EDLPNPPPSL Q

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	140	148	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00617	PBM	Transfer from AT4G35550	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020573161.1	1e-118	WUSCHEL-related homeobox 8-like, partial
Swissprot	Q5QMM3	2e-74	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A2I0WGR7	3e-93	A0A2I0WGR7_9ASPA; WUSCHEL-related homeobox 8
STRING	XP_008781303.1	2e-84	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3898	37	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	3e-57	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]