PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_12686 | ||||||||
Common Name | SEP4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 246aa MW: 28377.6 Da PI: 8.8393 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 91.9 | 3.2e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k ienk+nrqvtf+kRrng+lKKA+ELSvLCdaev +i+fs++g+l+e++s PEQU_12686 9 KMIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVGLIVFSNRGRLFEFCS 59 68***********************************************96 PP | |||||||
2 | K-box | 97.8 | 1.6e-32 | 78 | 173 | 5 | 100 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + ++ ++++++ +qe+ kLk+++e Lqr+qR+llGedL L+ keL+qLe++Le slkkiRs+K++l+l+q+ +l++ke++lqe+nkaLr+kl+e PEQU_12686 78 TETRIPSKETQNNYQEYLKLKAKVEYLQRSQRNLLGEDLALLTTKELEQLEHELEMSLKKIRSTKSQLMLDQLCDLKRKEQMLQEANKALRMKLQE 173 445578999************************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.029 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.1E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.76E-42 | 2 | 76 | No hit | No description |
SuperFamily | SSF55455 | 3.53E-33 | 2 | 87 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.2E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.0E-25 | 11 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.2E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.2E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 9.4E-28 | 84 | 171 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 16.165 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MGRGRVELKM IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVGLIVFSN RGRLFEFCSS 60 SSMMKTIERY QKCSYNTTET RIPSKETQNN YQEYLKLKAK VEYLQRSQRN LLGEDLALLT 120 TKELEQLEHE LEMSLKKIRS TKSQLMLDQL CDLKRKEQML QEANKALRMK LQEDEPEMPL 180 QLSWSGGRTA GNARSPCGRQ PQSDVFFQPL PCDPTLQIGY NPICIEEQLN NGSSSHNING 240 FLPGWM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 6e-27 | 75 | 173 | 1 | 103 | Developmental protein SEPALLATA 3 |
4ox0_B | 6e-27 | 75 | 173 | 1 | 103 | Developmental protein SEPALLATA 3 |
4ox0_C | 6e-27 | 75 | 173 | 1 | 103 | Developmental protein SEPALLATA 3 |
4ox0_D | 6e-27 | 75 | 173 | 1 | 103 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF673860 | 0.0 | KF673860.1 Phalaenopsis equestris SEPALLATA-like MADS-box protein 4 (SEP4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020572941.1 | 0.0 | MADS-box protein CMB1-like isoform X1 | ||||
Swissprot | Q8LLR2 | 1e-112 | MADS2_VITVI; Agamous-like MADS-box protein MADS2 | ||||
TrEMBL | X5DD29 | 0.0 | X5DD29_PHAEQ; SEPALLATA-like MADS-box protein 4 | ||||
STRING | XP_008811033.1 | 1e-122 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2221 | 32 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02310.1 | 2e-98 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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