PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_12680
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MIKC_MADS
Protein Properties Length: 301aa    MW: 35454.3 Da    PI: 10.296
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_12680genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.17.6e-31959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva++ifs +gklyeys+
  PEQU_12680  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALVIFSAKGKLYEYST 59
                79***********************************************96 PP
2K-box84.22.7e-28861721298
       K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                 + +   ++e+ kLk++ie Lq++  hl+Ge+L+sLs+keLq+LeqqLe++lk iR+++ +lll+ i e q+kek+l e+n  L++kl
  PEQU_12680  86 ESQGDICNEYGKLKNKIEALQKSRSHLMGEQLDSLSIKELQHLEQQLETALKLIRTQRIQLLLNCITEFQRKEKSLLEHNSLLEAKL 172
                 4566799****************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.819161IPR002100Transcription factor, MADS-box
SMARTSM004328.5E-39160IPR002100Transcription factor, MADS-box
CDDcd002654.63E-38276No hitNo description
SuperFamilySSF554555.36E-33387IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-31323IPR002100Transcription factor, MADS-box
PfamPF003192.1E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-313859IPR002100Transcription factor, MADS-box
PfamPF014863.1E-2387172IPR002487Transcription factor, K-box
PROSITE profilePS5129714.59788178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009933Biological Processmeristem structural organization
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MRRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALVIFSA KGKLYEYSTD  60
SCMDRILDRY ERYCYAEKAL QITEPESQGD ICNEYGKLKN KIEALQKSRS HLMGEQLDSL  120
SIKELQHLEQ QLETALKLIR TQRIQLLLNC ITEFQRKEKS LLEHNSLLEA KLCSFQLDPQ  180
ITETATQNPN RKQQKQDQVN SSPSPFLPPN HLPTLNLGUH TSHSNIHDLN TTKKYKNYYR  240
KINKQTKQKI UKIETUFWLU HLKRNTCSCY TRRVMARRLK ILRFFRUIAS ACRHGCFAPQ  300
P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-19173172MEF2C
5f28_B3e-19173172MEF2C
5f28_C3e-19173172MEF2C
5f28_D3e-19173172MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00096ChIP-seqTransfer from AT1G69120Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ0650980.0JQ065098.1 X Doritaenopsis hybrid cultivar MADS2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020572933.11e-157truncated transcription factor CAULIFLOWER D-like isoform X2
SwissprotQ6E6S74e-85AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLH9BR441e-154H9BR44_9ASPA; MADS2
STRINGXP_008794203.15e-85(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115137113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-72MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]