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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PEQU_12360 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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| Family | bHLH | ||||||||
| Protein Properties | Length: 230aa MW: 25504.4 Da PI: 9.8915 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 20.1 | 1.1e-06 | 102 | 141 | 10 | 54 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
r +R+++ +a+ L+ lP + + + a+iL +++YIk L
PEQU_12360 102 RIYRAKVAEAIKALKNALPFS-----EMGNQASILDNVIDYIKFL 141
89******************8.....679**************99 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| CDD | cd00083 | 3.33E-6 | 91 | 145 | No hit | No description |
| PROSITE profile | PS50888 | 11.147 | 92 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 2.1E-8 | 93 | 152 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 3.79E-8 | 93 | 152 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 0.0012 | 98 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 230 aa Download sequence Send to blast |
MLEPVIRLQR AVRKADGGSL ANKQIILSFC SLRCSIETQR INPRREGLRQ PFVIGYSLPN 60 TQGEQAKISN KPPSKYCSNV AQQSEASMGT KMTRAPKVLS SRIYRAKVAE AIKALKNALP 120 FSEMGNQASI LDNVIDYIKF LKLRLNVLSQ TRLTGEASAH SFVHIEGFGH YLLHPQTYHQ 180 PLEEMVGNLL KSNPQVANEL LEHKGLAIVP MDSAYTALQN SLNPCSNSCQ |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_020580673.1 | 1e-126 | transcription factor bHLH66-like isoform X2 | ||||
| TrEMBL | A0A2I0WFP7 | 2e-82 | A0A2I0WFP7_9ASPA; Transcription factor bHLH82 | ||||
| STRING | XP_008810758.1 | 1e-39 | (Phoenix dactylifera) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP25051 | 3 | 4 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G30980.1 | 3e-16 | LJRHL1-like 2 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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