PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_12246 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | ERF | ||||||||
Protein Properties | Length: 367aa MW: 41612.5 Da PI: 4.8602 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.8 | 7.3e-20 | 118 | 167 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++G+r+++ +g+W+AeIrdp++ r++lg+++t eeAa+a++aa+++++g PEQU_12246 118 QFRGIRQRP-WGKWAAEIRDPRK---GERVWLGTYDTSEEAARAYDAAARRIRG 167 69*******.**********954...3*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.6E-32 | 118 | 176 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.23E-19 | 118 | 176 | No hit | No description |
SuperFamily | SSF54171 | 1.96E-22 | 118 | 177 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.3E-37 | 118 | 181 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.434 | 118 | 175 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.8E-11 | 119 | 130 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.7E-14 | 119 | 167 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.8E-11 | 141 | 157 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MCGGAIISDY IATARPQRVT ADYLWPDLRK KKKGSRKIRR AAYEDDFEAD FREFEDETDV 60 NEAVDVDDEE ELIEVKPFAF RSNGPPLSLG VKERSNIKKR PQLDGPAEKL AKRKRKNQFR 120 GIRQRPWGKW AAEIRDPRKG ERVWLGTYDT SEEAARAYDA AARRIRGKKA KVNFPDEFPQ 180 AAQNHVKLNA PKTQKPKLYD LTNEYNFNQV FGFPNAYYNA TSSPGLGKVE LLKLEPATSS 240 PTLKALSPSQ EVPNFLSEQE SNSLNSSDFG WEHEANMPEI TSIPASIVEN LESGFLEESE 300 QKKKLKNNSE LSDELSAFEP YMKFEPFLEG GSDLSFDFLL GADLTQDGIN FVNLWSFEDT 360 PMAEGVF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-22 | 117 | 178 | 13 | 75 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 97 | 115 | KKRPQLDGPAEKLAKRKRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020586319.1 | 0.0 | ethylene-responsive transcription factor 1 | ||||
Refseq | XP_020586320.1 | 0.0 | ethylene-responsive transcription factor 1 | ||||
TrEMBL | A0A2I0WX98 | 0.0 | A0A2I0WX98_9ASPA; Ethylene-responsive transcription factor 1 | ||||
STRING | XP_008784363.1 | 1e-107 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1039 | 38 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14230.3 | 1e-41 | related to AP2 2 |