PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_12090
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family WRKY
Protein Properties Length: 489aa    MW: 53642.4 Da    PI: 7.7509
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_12090genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.81.1e-33195253160
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                 +dDgynWrKYGqK+vkgsefprsYY+Ct+++Cpvkkkvers  d++v+ei+Y+g+Hnh+k
  PEQU_12090 195 VDDGYNWRKYGQKQVKGSEFPRSYYKCTHPKCPVKKKVERSL-DGHVTEIIYKGQHNHQK 253
                 59****************************************.***************85 PP
2WRKY105.72.3e-33370428159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k+ver+++d k+v++tYeg+Hnh+
  PEQU_12090 370 LDDGYRWRKYGQKVVKGNPHPRSYYKCTHAGCNVRKHVERASTDAKAVITTYEGKHNHD 428
                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-29188254IPR003657WRKY domain
SuperFamilySSF1182902.09E-26193254IPR003657WRKY domain
SMARTSM007742.5E-37195253IPR003657WRKY domain
PROSITE profilePS5081123.284196254IPR003657WRKY domain
PfamPF031061.4E-25196252IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.7E-37355430IPR003657WRKY domain
SuperFamilySSF1182901.96E-29362430IPR003657WRKY domain
PROSITE profilePS5081138.262365430IPR003657WRKY domain
SMARTSM007742.5E-39370429IPR003657WRKY domain
PfamPF031064.1E-26371428IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:1900150Biological Processregulation of defense response to fungus
GO:1900425Biological Processnegative regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MTLVSSFFAE DPESECRSFS QLLAGAMASP AAITAARTSV ETMVADVRGK GGREDERGRT  60
SLNLGHSRPM NLLVAQSPYF TVPPGLSPGG LLDSPAILRD LIDGFMQGQF GMSHQQALAQ  120
VTAQAAHSHA QIHSQTEYPS SLPSASLTQQ VSTINMATTQ PVQSLTSSSY NSGSALMSHC  180
DQKAQPTALV VDKPVDDGYN WRKYGQKQVK GSEFPRSYYK CTHPKCPVKK KVERSLDGHV  240
TEIIYKGQHN HQKPPPNKRS KDGTAEFSGS SDPNNADSRT QGDISYLNRS SEGSKRSRES  300
VHGASEQLTG SSDAEELGDA EAGVDEAEYG GESEQKRRNL ETRVIESAAS HRMVTEPRII  360
VQTTSEVDLL DDGYRWRKYG QKVVKGNPHP RSYYKCTHAG CNVRKHVERA STDAKAVITT  420
YEGKHNHDVP AARNSSHNTH PYALPPNRNN SAPHQIDSNN QFINEIPDLR NNVQRPIAVL  480
QLKAEHEMT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-40195431878Probable WRKY transcription factor 4
2lex_A7e-40195431878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020580035.10.0probable WRKY transcription factor 4
SwissprotQ9XI901e-141WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A2I0WHC50.0A0A2I0WHC5_9ASPA; Putative WRKY transcription factor 3
STRINGXP_010258215.11e-175(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-125WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]