PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_11792 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | LBD | ||||||||
Protein Properties | Length: 163aa MW: 18093.6 Da PI: 9.4038 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 115.2 | 4.2e-36 | 6 | 101 | 2 | 97 |
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 CaaCk++rrkC+++C+lap fpa++p+ f n+h+lFG s+++k+l++l+ + r++a++s++++++ara+dP G+++++l+lq ++ +a l+++ PEQU_11792 6 CAACKYQRRKCSPNCILAPFFPADKPQIFLNTHRLFGLSKIIKILNSLEANARPEAIRSIIFQSNARAQDPAGGCYRIVLQLQDSIQLYRARLDHV 101 ***************************************************************************************999988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.781 | 4 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.9E-34 | 6 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
XSPPTCAACK YQRRKCSPNC ILAPFFPADK PQIFLNTHRL FGLSKIIKIL NSLEANARPE 60 AIRSIIFQSN ARAQDPAGGC YRIVLQLQDS IQLYRARLDH VLRRISAIRE RAQILQAETS 120 GSCDQDLEQC LNSGAIARQP GEVYNGGSEV RGVPIQGDVK LRI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-25 | 6 | 99 | 12 | 105 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-25 | 6 | 99 | 12 | 105 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020583717.1 | 1e-115 | LOB domain-containing protein 22-like | ||||
Swissprot | Q9LRW1 | 8e-35 | LBD22_ARATH; LOB domain-containing protein 22 | ||||
TrEMBL | A0A199VQR8 | 4e-37 | A0A199VQR8_ANACO; LOB domain-containing protein 22 | ||||
TrEMBL | A0A2C9UXW9 | 1e-37 | A0A2C9UXW9_MANES; Uncharacterized protein | ||||
TrEMBL | A0A2H3X816 | 3e-37 | A0A2H3X816_PHODC; LOB domain-containing protein 7-like | ||||
STRING | cassava4.1_022118m | 2e-38 | (Manihot esculenta) | ||||
STRING | XP_008779803.1 | 4e-38 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5228 | 34 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 3e-37 | LOB domain-containing protein 22 |
Publications ? help Back to Top | |||
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