PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_11472 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | TCP | ||||||||
Protein Properties | Length: 292aa MW: 32589.4 Da PI: 6.8925 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 93.4 | 4.6e-29 | 56 | 138 | 3 | 66 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...................s 66 ++kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WL+++a+ +i++l + PEQU_11472 56 VGKDRHSKVSTIKGLRDRRVRLSIPTAIQVYDLQDKLGLNQPSKVVDWLINAAQNEIDKLLPEpllpsgnsfiqfpqtdlnsN 138 68************************************************************955544443333322221110 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 28.109 | 57 | 115 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 2.9E-27 | 57 | 177 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MMKLYKMIKD SKVKEDQIKQ EEGGTIDYTQ HQMSKRLCSS LPNQRIARLS QSDHFVGKDR 60 HSKVSTIKGL RDRRVRLSIP TAIQVYDLQD KLGLNQPSKV VDWLINAAQN EIDKLLPEPL 120 LPSGNSFIQF PQTDLNSNSI RAQAFSANAD PFMLISNNYV DDITSFPKPT LNSFHSYYQM 180 DPYASHVGNN HSSQEVFSND FHLASASSSL SSSLTSMPAE TQIVMPSSFS SYLTGTNSIQ 240 TPSTFAELLP WNSSSINFKQ YVQQDEAARQ LVNSTVYKDS GAGYGSSAAD FF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-17 | 62 | 115 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 4e-17 | 62 | 115 | 1 | 54 | Putative transcription factor PCF6 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020591194.1 | 0.0 | transcription factor TCP13-like | ||||
TrEMBL | A0A1D6ZNH1 | 0.0 | A0A1D6ZNH1_PHAEQ; TCP transcription factor |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2490 | 35 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 1e-32 | plastid transcription factor 1 |