PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_11462
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 28443.4 Da    PI: 8.3464
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_11462genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.31.3e-30959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+l+e++s
  PEQU_11462  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLFEFCS 59
                79***********************************************96 PP
2K-box98.41e-32781735100
       K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                 + + + ++++++++qe+ kLk ++e Lqr+qR+llGedL +L  keL+qLe qLe slk+iRs+K++l+l+q+ +l++ke++lqe+n+aLr+kl+e
  PEQU_11462  78 TESTVPSKDTQNSYQEYLKLKTKVEYLQRSQRNLLGEDLIELGSKELEQLELQLEMSLKQIRSTKTQLMLDQLCDLKRKEQMLQEANRALRRKLQE 173
                 344488999************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.0E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.025161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-33282IPR002100Transcription factor, MADS-box
CDDcd002652.58E-43276No hitNo description
PRINTSPR004043.1E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003197.9E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-323859IPR002100Transcription factor, MADS-box
PfamPF014864.2E-2884172IPR002487Transcription factor, K-box
PROSITE profilePS5129716.17487177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIVFSN RGRLFEFCSS  60
SSMTKTLERY QKCSYNATES TVPSKDTQNS YQEYLKLKTK VEYLQRSQRN LLGEDLIELG  120
SKELEQLELQ LEMSLKQIRS TKTQLMLDQL CDLKRKEQML QEANRALRRK LQEDEPEIPL  180
ELSWTGGGGN GPCERQQPQS EDFFQPLPSL QIGFSPICID QQLNTELRII IRTUYUWLHF  240
GLDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A5e-27751731103Developmental protein SEPALLATA 3
4ox0_B5e-27751731103Developmental protein SEPALLATA 3
4ox0_C5e-27751731103Developmental protein SEPALLATA 3
4ox0_D5e-27751731103Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6738580.0KF673858.1 Phalaenopsis equestris SEPALLATA-like MADS-box protein 2 (SEP2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020591078.11e-168MADS-box protein CMB1-like
SwissprotQ8LLR21e-103MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLX5CVS41e-161X5CVS4_PHAEQ; SEPALLATA-like MADS-box protein 2
STRINGXP_008811033.11e-118(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22213264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.13e-85MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]