PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_11418
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family TALE
Protein Properties Length: 308aa    MW: 34788.1 Da    PI: 5.9336
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_11418genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.92e-092302652055
                 HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
    Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                 +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  PEQU_11418 230 NKWPYPSETEKVALAESTGLDQKQINNWFINQRKRH 265
                 5679*****************************885 PP
2ELK38.23e-13185206122
         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                 ELK+qLlrKYsg+LgsL+qE+s
  PEQU_11418 185 ELKQQLLRKYSGCLGSLRQELS 206
                 9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.1E-174185IPR005540KNOX1
PfamPF037901.7E-184382IPR005540KNOX1
SMARTSM012565.7E-2290141IPR005541KNOX2
PfamPF037919.1E-2395140IPR005541KNOX2
SMARTSM01188170099119IPR005539ELK domain
PROSITE profilePS5121310.825185205IPR005539ELK domain
SMARTSM011889.8E-8185206IPR005539ELK domain
PfamPF037892.5E-10185206IPR005539ELK domain
PROSITE profilePS5007113.005205268IPR001356Homeobox domain
SuperFamilySSF466894.71E-19206277IPR009057Homeodomain-like
SMARTSM003893.3E-13207272IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.4E-27210270IPR009057Homeodomain-like
CDDcd000862.95E-12217269No hitNo description
PfamPF059205.1E-16225264IPR008422Homeobox KN domain
PROSITE patternPS000270243266IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MDDFEFPSII TTQPSSSSSS HLIKNKAAFA GASLPPPPSL PEVKARIMAH PHYPNLVAAY  60
ADCHKLGAPP EVAARLSAVT EDLQLRSGGG RNFPTADPEL DQFMEAYYDI LVKYKEELSK  120
PFEEAADFLR KAESQLSSIT DLSSMSFHFS TDNEKCGTCS AEEDQIEVSL GETVLEGEHP  180
AEDRELKQQL LRKYSGCLGS LRQELSKKKK KGKLPKEARQ KLLSWWELHN KWPYPSETEK  240
VALAESTGLD QKQINNWFIN QRKRHWKPSE EMQFIVLDGY HQHEQQSATS FYLEGHFMGD  300
GNLYHIGS
Functional Description ? help Back to Top
Source Description
UniProtAppears to be involved in meristem formation and in the regulation of leaf morphology. Misexpression makes the leaf more compound which is always associated with growth retardation and loss of apical dominance, resulting in dwarfed, bushy plants. Probably binds to the DNA sequence 5'-TGAC-3'.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020591105.10.0homeotic protein knotted-1-like isoform X1
SwissprotQ413301e-103KN1_SOLLC; Homeotic protein knotted-1
TrEMBLA0A2I0X6B30.0A0A2I0X6B3_9ASPA; Homeobox protein knotted-1-like 6
STRINGXP_008790432.11e-114(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98863145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-99KNOTTED-like from Arabidopsis thaliana