PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_11373
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family TALE
Protein Properties Length: 508aa    MW: 55853.4 Da    PI: 8.6308
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_11373genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.11.7e-093463831954
                 HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 Fe   ++yps +++  LA+k+gL+ +qV++WF N R +
  PEQU_11373 346 FEHflHPYPSDADKHLLARKTGLSRNQVSNWFINARVR 383
                 554459******************************88 PP
2BELL112.62.1e-36208280272
        BELL   2 rqelqkkkakLlsllee..VdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                 r e+q+kk+kLls+l+e  V++rY++y+eq+q+v++sF+  +g g+a pYt+lA ka+SrhFrcLkdaia q+
  PEQU_11373 208 RFENQRKKSKLLSMLDEasVERRYNHYCEQMQMVVNSFDSLMGFGAAMPYTALARKAMSRHFRCLKDAIAAQL 280
                 779*************8779**************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005748.5E-66128278IPR006563POX domain
PfamPF075261.2E-47133277IPR006563POX domain
PROSITE profilePS5007112.455324387IPR001356Homeobox domain
SMARTSM003897.2E-9327391IPR001356Homeobox domain
CDDcd000864.85E-11327388No hitNo description
SuperFamilySSF466894.15E-17328394IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-27330393IPR009057Homeodomain-like
PfamPF059203.9E-18344383IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
SSASPDHPHQ LLHHHHDVQS QAFLGGGAGA AIFGEGMSFG GGGGMRESQS GPLLSLSSSL  60
QQLEMRKADE MRGPTAGKSY NSQRQQEQQL HPASIQQPPP PTAMLQSQAS HQSQFEHLHM  120
SSSSFGSMSA ANVLRNSKYS RAAQELLEEF CSVSRGHVRG NTTGIRTSFV NPTNHSHGGG  180
GGASSTALPA AASSSSSKDV PPLSPADRFE NQRKKSKLLS MLDEASVERR YNHYCEQMQM  240
VVNSFDSLMG FGAAMPYTAL ARKAMSRHFR CLKDAIAAQL RRTCELLRDN DGSGLTKGDT  300
PKLRLIDQNL RQQKAFHQMG MMEQEAWRPQ RGLPDRSVTI LRSWLFEHFL HPYPSDADKH  360
LLARKTGLSR NQVSNWFINA RVRLWKPMVE DMYQQEAKEE EDSRVNPDHE TNMTPHRVLL  420
AAATTAQQRH LPHTTESEAQ TNHDQPPPPP HDLSASTNSL IFPPPALDDE MYRRAAAVAA  480
ARTGDLSLTL GLRHAGGNAP DTAGRFGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A5e-15333390562Homeobox protein Meis2
3k2a_B5e-15333390562Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269|PubMed:17873098}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020591053.10.0LOW QUALITY PROTEIN: BEL1-like homeodomain protein 4
SwissprotQ94KL51e-127BLH4_ARATH; BEL1-like homeodomain protein 4
SwissprotQ9SW801e-127BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLA0A2I0X7V70.0A0A2I0X7V7_9ASPA; BEL1-like homeodomain protein 2
STRINGGSMUA_Achr7P27440_0011e-149(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44332945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23760.31e-127BEL1-like homeodomain 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]