PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_11292

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

MYB

Protein Properties

Length: 300aa MW: 33888.3 Da PI: 5.1142

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_11292	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.7	9.6e-17	21	68	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed+ll+++v+ +G g W+t++ g++R++k+c++rw++yl PEQU_11292 21 KGAWTAVEDKLLIKYVNAHGEGKWTTVPYIAGLKRSGKSCRLRWLNYL 68 79********************************************97 PP
2	Myb_DNA-binding	43	1e-13	74	151	1	47
TSSS-HHHHHHHHHHHHHTTTT................................-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg................................tWktIartmgkgRtlkqcksrwqky 47 rg++++eE +l+++++k+lG+ W++Ia +++ gRt++++k++w++ PEQU_11292 74 RGNFSEEEIDLIIRLHKLLGNSmtislemlterhllvsqntvevtttdvlvgkmIWSLIAGRIP-GRTDNEIKNYWNTT 151 89*****************9**************************************.**********87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.6E-21	13	71	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.799	16	72	IPR017930	Myb domain
SMART	SM00717	9.7E-14	20	70	IPR001005	SANT/Myb domain
Pfam	PF00249	2.2E-15	21	68	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.71E-20	22	95	IPR009057	Homeodomain-like
CDD	cd00167	1.20E-9	23	68	No hit	No description
PROSITE profile	PS50090	8.56	69	152	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.5E-19	72	92	IPR009057	Homeodomain-like
SMART	SM00717	1.7E-9	73	154	IPR001005	SANT/Myb domain
Pfam	PF00249	3.3E-10	74	151	IPR001005	SANT/Myb domain
CDD	cd00167	5.78E-6	76	152	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.5E-19	125	155	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.81E-6	129	157	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
ESKRQREMGR NPSCSKEGLN KGAWTAVEDK LLIKYVNAHG EGKWTTVPYI AGLKRSGKSC 60 RLRWLNYLRP NVKRGNFSEE EIDLIIRLHK LLGNSMTISL EMLTERHLLV SQNTVEVTTT 120 DVLVGKMIWS LIAGRIPGRT DNEIKNYWNT TLAKKTTSQH PSQKPPASNQ ALPSPSSSLS 180 PQSTNNKTLN RPKALRCSQL GFLVGEPTAA VASVLPNQNT KASTIAEEEL LQEEEENVVW 240 NCSFDEYNAV FADEDLMEFN GMQDFESWML NDDGCYLPDD ENINWLTSLF DMEGELLKQF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	2e-20	19	156	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF769467	0.0	KF769467.1 Phalaenopsis equestris MYB transcription factor 2 (MYB2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020582444.1	1e-169	transcription factor MYB23-like
TrEMBL	A0A096ZX46	1e-159	A0A096ZX46_PHAEQ; MYB transcription factor 2

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	4e-51	myb domain protein 3