PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_11163 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | LBD | ||||||||
Protein Properties | Length: 209aa MW: 23049.7 Da PI: 5.5831 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 128.8 | 2.4e-40 | 8 | 104 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +Ca+Ck+lrrkC+++C++ap+fp++qp+kfa vh++FGasn+ kll++lp++ r+da+ slvyeA++r++dPv G+vg+il l+ ql++lk++l+++ PEQU_11163 8 PCAGCKFLRRKCQPNCIFAPHFPSNQPHKFADVHRVFGASNIAKLLNDLPPNLRDDAVLSLVYEAQMRLHDPVFGCVGIILVLEDQLQRLKSDLSRA 104 7*******************************************************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.293 | 7 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.1E-40 | 8 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MSREPRPPCA GCKFLRRKCQ PNCIFAPHFP SNQPHKFADV HRVFGASNIA KLLNDLPPNL 60 RDDAVLSLVY EAQMRLHDPV FGCVGIILVL EDQLQRLKSD LSRAWGELMG LEMAAGMQEQ 120 QRMMMMMMMM AASGSGAVDD SGLVTGGSFG GQLGVAEAAG GDDEGYCGGI LFKILYTSEN 180 ILISETSHSW LSLFFRTHRI EIKLELDPD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-45 | 8 | 109 | 11 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-45 | 8 | 109 | 11 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ730231 | 0.0 | HQ730231.1 Phalaenopsis equestris clone PeWGSM081 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020571441.1 | 1e-123 | LOB domain-containing protein 6-like isoform X2 | ||||
Refseq | XP_020597149.1 | 1e-123 | LOB domain-containing protein 6-like isoform X2 | ||||
TrEMBL | A0A2I0WWE5 | 8e-57 | A0A2I0WWE5_9ASPA; LOB domain-containing protein 6 | ||||
STRING | EMT24931 | 8e-45 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5228 | 34 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 9e-37 | LOB domain-containing protein 25 |