PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PEQU_10762 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 225aa MW: 26185.4 Da PI: 5.2032 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.7 | 1.3e-18 | 10 | 57 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++lv+ v ++G ++W+ Ia+ g++Rt+k+c++rw++yl PEQU_10762 10 KGPWTEQEDLQLVCFVSLFGERRWDFIAKVSGLNRTGKSCRLRWFNYL 57 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 56.6 | 5.8e-18 | 64 | 108 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 gr+T++E+ l+v+++ ++G++ W++Iar+++ gRt++++k++w++++ PEQU_10762 64 GRMTPQEESLIVELHSEWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 108 89*******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.861 | 5 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.27E-30 | 8 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.4E-16 | 9 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-17 | 10 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-20 | 11 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.83E-12 | 12 | 57 | No hit | No description |
PROSITE profile | PS51294 | 20.447 | 62 | 112 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-16 | 62 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.8E-16 | 64 | 107 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.1E-24 | 65 | 110 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.85E-12 | 65 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 225 aa Download sequence Send to blast |
MVVVSEEKRK GPWTEQEDLQ LVCFVSLFGE RRWDFIAKVS GLNRTGKSCR LRWFNYLQPG 60 LKHGRMTPQE ESLIVELHSE WGNRWSRIAR RLPGRTDNEI KNYWRTHMRK MAQERKTKSS 120 PSASTISNCV SSHSEPLMAE TGPREDEDAA KVCPMEQIWN DIASLEASDD SSLNRCTDEL 180 CNFSCDNPQV MTSPVREYFV DDLWMIDDNE FSNVVTTNDF LFLKY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 4e-27 | 10 | 110 | 4 | 103 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 6e-27 | 3 | 110 | 51 | 157 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 6e-27 | 3 | 110 | 51 | 157 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 4e-27 | 10 | 110 | 4 | 103 | C-Myb DNA-Binding Domain |
1msf_C | 4e-27 | 10 | 110 | 4 | 103 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020583081.1 | 1e-169 | myb-related protein MYBAS1-like isoform X2 | ||||
Swissprot | Q53NK6 | 5e-74 | MYBA1_ORYSJ; Myb-related protein MYBAS1 | ||||
TrEMBL | A0A2I0X937 | 1e-116 | A0A2I0X937_9ASPA; Myb-related protein MYBAS1 | ||||
STRING | XP_008788078.1 | 2e-83 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP636 | 37 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G59780.3 | 7e-72 | myb domain protein 59 |
Publications ? help Back to Top | |||
---|---|---|---|
|