PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_10762
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB
Protein Properties Length: 225aa    MW: 26185.4 Da    PI: 5.2032
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_10762genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.71.3e-181057148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed++lv+ v ++G ++W+ Ia+  g++Rt+k+c++rw++yl
       PEQU_10762 10 KGPWTEQEDLQLVCFVSLFGERRWDFIAKVSGLNRTGKSCRLRWFNYL 57
                     79********************************************97 PP

2Myb_DNA-binding56.65.8e-1864108248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      gr+T++E+ l+v+++ ++G++ W++Iar+++ gRt++++k++w++++
       PEQU_10762  64 GRMTPQEESLIVELHSEWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 108
                      89*******************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.861561IPR017930Myb domain
SuperFamilySSF466898.27E-308104IPR009057Homeodomain-like
SMARTSM007176.4E-16959IPR001005SANT/Myb domain
PfamPF002493.0E-171057IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-201164IPR009057Homeodomain-like
CDDcd001674.83E-121257No hitNo description
PROSITE profilePS5129420.44762112IPR017930Myb domain
SMARTSM007171.7E-1662110IPR001005SANT/Myb domain
PfamPF002499.8E-1664107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-2465110IPR009057Homeodomain-like
CDDcd001677.85E-1265108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MVVVSEEKRK GPWTEQEDLQ LVCFVSLFGE RRWDFIAKVS GLNRTGKSCR LRWFNYLQPG  60
LKHGRMTPQE ESLIVELHSE WGNRWSRIAR RLPGRTDNEI KNYWRTHMRK MAQERKTKSS  120
PSASTISNCV SSHSEPLMAE TGPREDEDAA KVCPMEQIWN DIASLEASDD SSLNRCTDEL  180
CNFSCDNPQV MTSPVREYFV DDLWMIDDNE FSNVVTTNDF LFLKY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-27101104103MYB PROTO-ONCOGENE PROTEIN
1h88_C6e-27311051157MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-27311051157MYB PROTO-ONCOGENE PROTEIN
1mse_C4e-27101104103C-Myb DNA-Binding Domain
1msf_C4e-27101104103C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020583081.11e-169myb-related protein MYBAS1-like isoform X2
SwissprotQ53NK65e-74MYBA1_ORYSJ; Myb-related protein MYBAS1
TrEMBLA0A2I0X9371e-116A0A2I0X937_9ASPA; Myb-related protein MYBAS1
STRINGXP_008788078.12e-83(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.37e-72myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]