PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_10728 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | HSF | ||||||||
Protein Properties | Length: 261aa MW: 30088.9 Da PI: 7.0631 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 80.6 | 2.4e-25 | 11 | 96 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d+ +++++sw e+g+sfvv+ + efak++Lp+yFkh+nf+SFv gF+k+ e+ weF+++ F+kgkk+ l++i+ PEQU_10728 11 FLTKTYQLVDDPCTDHIVSWGEDGTSFVVWRPPEFAKDLLPNYFKHNNFSSFV------GFRKTVAER---------WEFANELFRKGKKDILSEIH 92 9***************************************************9......*****9998.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k+ PEQU_10728 93 RRKT 96 **97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.8E-28 | 3 | 88 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 3.2E-45 | 7 | 94 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 9.66E-25 | 8 | 94 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 4.9E-12 | 11 | 34 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 7.4E-22 | 11 | 94 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.9E-12 | 49 | 61 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MESQKSVPAP FLTKTYQLVD DPCTDHIVSW GEDGTSFVVW RPPEFAKDLL PNYFKHNNFS 60 SFVGFRKTVA ERWEFANELF RKGKKDILSE IHRRKTPQIS QQYHHQHYYS PPTIHYQEEM 120 SRWIEPTSPL PNSDANKFIS ALTEDNERLR RKNSYLLSEL THMKQLCNDI IYFIQNHVSP 180 VPAEERQVNP RPCRIVEIGP SDNSAAPLLE VQCSKNHGSV EKVSKEPDGG IKLFGIPIKG 240 NNILQSEIGG KKDSEKEFFD S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 1e-16 | 1 | 96 | 11 | 122 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020583107.1 | 0.0 | heat stress transcription factor B-4b-like | ||||
Swissprot | Q9C635 | 2e-74 | HSFB4_ARATH; Heat stress transcription factor B-4 | ||||
TrEMBL | A0A2I0X4K0 | 1e-118 | A0A2I0X4K0_9ASPA; Heat stress transcription factor B-4b | ||||
STRING | XP_008794230.1 | 1e-108 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP121 | 37 | 394 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46264.1 | 2e-74 | heat shock transcription factor B4 |