PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_10664
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB
Protein Properties Length: 287aa    MW: 32951.4 Da    PI: 10.3614
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_10664genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.93.1e-1560105147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed  l+++v++ G+ +W++Ia+++  gR++k+c++rw++ 
       PEQU_10664  60 RGHWRPAEDAMLKKLVALNGPQNWNLIAQKLE-GRSGKSCRLRWFNQ 105
                      899*****************************.***********996 PP
2Myb_DNA-binding513.3e-16112155146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r+++T+eE+++l+ a+k +G++ W+ Iar ++  Rt++ +k++w+ 
       PEQU_10664 112 RNAFTKEEEQRLLVAHKFYGNK-WAFIARLFP-WRTDNAVKNHWHV 155
                      789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.00554106IPR017930Myb domain
SuperFamilySSF466895.62E-2659153IPR009057Homeodomain-like
SMARTSM007171.1E-1259108IPR001005SANT/Myb domain
PfamPF002498.8E-1560105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-2461113IPR009057Homeodomain-like
CDDcd001677.25E-1163104No hitNo description
PROSITE profilePS5129421.772107161IPR017930Myb domain
SMARTSM007171.1E-13111159IPR001005SANT/Myb domain
PfamPF002499.1E-14112154IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-18114159IPR009057Homeodomain-like
CDDcd001676.91E-9114154No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MGLPLPSPPT LLSFFEKNGK FKESRVPLEQ QDGLFSAGEE YSLDLVSREH VARHSKLSYR  60
GHWRPAEDAM LKKLVALNGP QNWNLIAQKL EGRSGKSCRL RWFNQLDPRI NRNAFTKEEE  120
QRLLVAHKFY GNKWAFIARL FPWRTDNAVK NHWHVIMARR QRERSNDCRR RKKSNLSIDG  180
NNHDSVSACA DLISLRSSFT SDGFFSTCKH LQLPLKDQKP SRYVIGSDGK PVAGRTDLSD  240
NSDLDYESSS TETMKSQNAN NFMLKKTDHK KEKIKLPFID FLGVGAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-28601604104MYB PROTO-ONCOGENE PROTEIN
1h88_C8e-286016058158MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-286016058158MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-28601604104C-Myb DNA-Binding Domain
1msf_C3e-28601604104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159172RQRERSNDCRRRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020583083.10.0transcription factor MYB52-like
TrEMBLA0A2I0VJJ51e-122A0A2I0VJJ5_9ASPA; Transcription factor MYB44
STRINGGSMUA_Achr5P27750_0017e-78(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.15e-65myb domain protein 105