PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_10616 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | LBD | ||||||||
Protein Properties | Length: 154aa MW: 17056.6 Da PI: 8.213 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.9 | 9.4e-40 | 26 | 124 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++C lapyfp ++p kf +h++FGasn++k l++lpe++r da+ss+vyeA +r++dPvyG++g i lq+q+e+l+a+la+ ++ PEQU_10616 26 PCAACKILRRRCAAQCLLAPYFPPTEPLKFTTAHHVFGASNIIKSLQELPESQRADAVSSMVYEATVRIKDPVYGCAGAICYLQKQVEELQAQLARSRA 124 7*********************************************************************************************98775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.905 | 25 | 126 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.6E-40 | 26 | 122 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
STTSSSFSPP LPPHQNPAPR SNYQSPCAAC KILRRRCAAQ CLLAPYFPPT EPLKFTTAHH 60 VFGASNIIKS LQELPESQRA DAVSSMVYEA TVRIKDPVYG CAGAICYLQK QVEELQAQLA 120 RSRAPRAELL AVETQHNHIL ALFCKDFDFC LPQQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-39 | 25 | 119 | 10 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-39 | 25 | 119 | 10 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020578233.1 | 1e-109 | LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 3e-55 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
Swissprot | Q9SK08 | 4e-55 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | A0A2I0VRM6 | 8e-76 | A0A2I0VRM6_9ASPA; LOB domain-containing protein 11 | ||||
STRING | XP_008789049.1 | 1e-61 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2645 | 37 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 3e-57 | LOB domain-containing protein 1 |