PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_10463 | ||||||||
Common Name | MADS6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 210aa MW: 24547.3 Da PI: 9.8047 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.9 | 3.7e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtfskRrngi+KKA+E+SvLCda+v+++ifss gk++ey+s PEQU_10463 9 KRIENSTNRQVTFSKRRNGIMKKAKEISVLCDAQVSLVIFSSLGKMFEYCS 59 79***********************************************96 PP | |||||||
2 | K-box | 81.3 | 2.3e-27 | 71 | 168 | 1 | 98 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 yq++sgk+l++ak+e+l+ e++++kke++n+q e+Rhl+GedL+sL+ keL +e++L+++l+++R+k++++l++ ++ ++ e+e+++ + L+++ PEQU_10463 71 YQQNSGKKLWDAKHENLSAEIDRIKKENDNMQIELRHLKGEDLNSLNPKELIPIEEALQNGLTSVRDKQMDYLKMLKKNERMLEDENKRLTYLLHQQQ 168 899***********************************************************************999999999999999999999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.744 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.4E-42 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.7E-37 | 2 | 96 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.04E-43 | 2 | 80 | No hit | No description |
PRINTS | PR00404 | 3.2E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.1E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.0E-19 | 82 | 161 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.112 | 84 | 170 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MGRGKIEIKR IENSTNRQVT FSKRRNGIMK KAKEISVLCD AQVSLVIFSS LGKMFEYCSP 60 STTLSKMLEK YQQNSGKKLW DAKHENLSAE IDRIKKENDN MQIELRHLKG EDLNSLNPKE 120 LIPIEEALQN GLTSVRDKQM DYLKMLKKNE RMLEDENKRL TYLLHQQQMA MEGSMRELDI 180 GYHHKDREYA AQMPMTFRVQ PIQPNLQGNK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-20 | 1 | 73 | 1 | 71 | MEF2C |
5f28_B | 2e-20 | 1 | 73 | 1 | 71 | MEF2C |
5f28_C | 2e-20 | 1 | 73 | 1 | 71 | MEF2C |
5f28_D | 2e-20 | 1 | 73 | 1 | 71 | MEF2C |
6byy_A | 2e-20 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 2e-20 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 2e-20 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 2e-20 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 2e-20 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 2e-20 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 2e-20 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 2e-20 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules (whorl 2). {ECO:0000269|PubMed:14704206}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00080 | ChIP-seq | Transfer from AT5G20240 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY678299 | 0.0 | AY678299.1 Phalaenopsis equestris MADS box protein 6 (MADS6) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020573549.1 | 1e-156 | MADS-box transcription factor 2 | ||||
Swissprot | Q40702 | 1e-112 | MADS2_ORYSJ; MADS-box transcription factor 2 | ||||
TrEMBL | Q49P80 | 1e-154 | Q49P80_PHAEQ; MADS box protein 6 | ||||
TrEMBL | Q5XM80 | 1e-154 | Q5XM80_9ASPA; MADS box PI-like protein 9 | ||||
STRING | XP_008783315.1 | 1e-123 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3434 | 38 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20240.1 | 8e-88 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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