PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_10362 | ||||||||
Common Name | MYB11 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | MYB | ||||||||
Protein Properties | Length: 238aa MW: 27283.1 Da PI: 8.5883 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.2 | 1.4e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEdell+ v+ G g+W++ +++ g++R +k+c++rw++yl PEQU_10362 14 KGAWTAEEDELLASFVNAVGEGNWTSLPKKAGLNRRGKSCRLRWLNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.3 | 6.5e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + eE+el+++++k+lG++ W++Ia +++ gRt++++k++w++ PEQU_10362 67 RGNISVEEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111 78999*****************.*********.************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.574 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.82E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-22 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.20E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.649 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.4E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-25 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.92E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MKRRAKYNED GVNKGAWTAE EDELLASFVN AVGEGNWTSL PKKAGLNRRG KSCRLRWLNY 60 LRPNIKRGNI SVEEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT TLSKKIQTKK 120 FTINMPNVKA WKPKSNPLET KITSSISNLI QTTEIKCTKA SYPLHVLPST SEVIQTQQIS 180 QQNFQEELIE EKKGKVLDCD SFSYDDEMWI AGLEFGGEIN VIDDYDNDLV CSLFDKNL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-27 | 14 | 118 | 7 | 110 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF769476 | 0.0 | KF769476.1 Phalaenopsis equestris MYB transcription factor 11 (MYB11) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020573611.1 | 1e-176 | transcription factor MYB114-like | ||||
TrEMBL | A0A096ZX39 | 1e-172 | A0A096ZX39_PHAEQ; MYB transcription factor 11 | ||||
STRING | ERN11222 | 3e-62 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 2e-53 | myb domain protein 5 |