PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_10205
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family HSF
Protein Properties Length: 337aa    MW: 39006.8 Da    PI: 5.1143
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_10205genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.85.6e-36421332102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+ +++++sws+ +nsfvv+d+++fa ++Lpk+Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+h+ F +g+k+ll +ik
    PEQU_10205  42 FLTKTYDMVNDAGTDQMVSWSKMNNSFVVWDPHSFAMELLPKHFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFAHEGFLRGQKHLLMTIK 129
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+++
    PEQU_10205 130 RRRH 133
                   *975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.1E-3837126IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.6E-5838131IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.13E-3338131IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004478.0E-3242131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.4E-194265IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.4E-198092IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434081105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.4E-1993105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MEPPFPNELK EEKREGSSPR PSSSSATPRP MDGLQDSWPP PFLTKTYDMV NDAGTDQMVS  60
WSKMNNSFVV WDPHSFAMEL LPKHFKHNNF SSFVRQLNTY GFRKVDPDKW EFAHEGFLRG  120
QKHLLMTIKR RRHPAHPSNQ PQPSEACLEV GKYGLDGEID QLKRDKTLLM SEVIKLRQDQ  180
QNSKARLQTM AEKLKGIEQK QQHMMSFLAR AMQNPSFVDQ LAEQKDKRKE LEEAISKKRK  240
RYINYMPANV NESTSQQQIQ DPKSIYSLEG NDEISAFENL ALEVHGLNEI QGEEENEDQQ  300
PEDPVEELNE EFWQELFNEM ISDGLGTTEL DLAKPPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-264013127129Heat shock factor protein 1
5d5v_B2e-264013127129Heat shock factor protein 1
5d5v_D2e-264013127129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226240KRKELEEAISKKRKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020586087.10.0heat stress transcription factor A-2b
SwissprotQ6VBB21e-115HFA2B_ORYSJ; Heat stress transcription factor A-2b
TrEMBLA0A2I0WXV40.0A0A2I0WXV4_9ASPA; Heat stress transcription factor A-2b
STRINGXP_008813499.11e-125(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-100heat shock transcription factor A6B
Publications ? help Back to Top
  1. Rezaei MK,Shobbar ZS,Shahbazi M,Abedini R,Zare S
    Glutathione S-transferase (GST) family in barley: identification of members, enzyme activity, and gene expression pattern.
    J. Plant Physiol., 2013. 170(14): p. 1277-84
    [PMID:23664583]