PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_10105
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family bHLH
Protein Properties Length: 273aa    MW: 31376.1 Da    PI: 8.3065
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_10105genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.71e-1397148155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +r++h  +Er+RR+++N+ ++ Lr+++P +   +  K + a+i   A+ Y+k+L+
  PEQU_10105  97 QRMTHITVERNRRRQMNDYLAVLRSIMPAS---YVHKSDQASIIGGAISYVKELE 148
                 79****************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.16E-1295152No hitNo description
SuperFamilySSF474596.15E-1795162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.15496147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-1397158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-1197148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-8102153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MALEAVVFPK EPFTYSPCKD LYSLSNGEQD RWNFEFEFPL QEESIWNVLS PPPELVVGAD  60
AFNEQNHTTA PVIVGGNSKK KRRRIKRCKN KEEAENQRMT HITVERNRRR QMNDYLAVLR  120
SIMPASYVHK SDQASIIGGA ISYVKELEYM LQTLEARKKI DHQFPFLCSK DSTKKVEQMA  180
ATKAAADIEV TMVESHANLK VLSKRQPRQL LKMVMGLQSL RLTTLHLNLT TINDLVLYSF  240
SLKVEDDCQL ASVDEVVKAV YQMMERIREE TGF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17883KKKRRR
27886KKKRRRIKR
37986KKRRRIKR
48084KRRRI
597108RMTHITVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020586708.10.0transcription factor bHLH94-like
SwissprotQ9C7T43e-70BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2I0WHN31e-92A0A2I0WHN3_9ASPA; Transcription factor bHLH96
STRINGXP_010266731.12e-91(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.16e-57bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]