PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PEQU_09661 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 432aa MW: 46915.3 Da PI: 7.327 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.9 | 6.4e-31 | 211 | 269 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ PEQU_09661 211 ADGCQWRKYGQKMAKGNPCPRAYYRCTMAtGCPVRKQVQRCAEDRSILITTYEGNHNHP 269 7***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.6E-34 | 195 | 271 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.84E-28 | 203 | 271 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.516 | 205 | 271 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.7E-37 | 210 | 270 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.4E-27 | 212 | 269 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 432 aa Download sequence Send to blast |
ANTGSDQSTL DEGMSITEDE KEGKTELAAM QTELGRMTEE NQRLRGMLSQ VTNNYNALQM 60 HFMTLMQQQN QINKIGFSQA QAAVSDEQLK KQDNVGVAIA PRQFMDLGPA AADADEPSTH 120 SSTDGGSQDR SSQSLVNKDI STNSKEMIVF EREDSGFVRE ESPENSSHVW AANNHSKASG 180 TGLKPAEQSQ EATMRKARVS VRARSEAPMI ADGCQWRKYG QKMAKGNPCP RAYYRCTMAT 240 GCPVRKQVQR CAEDRSILIT TYEGNHNHPL PPPAMAMAST TSAAASMLLS GSMPSNDGLM 300 NSNVLARTIL PCSSSMATIS ASAPFPTVTL DLTQTANSLQ YQQRPPSQFH LPPPLPPPQP 360 SSLPHLFGQA IYNQSKFSGL QMSSAEVAKP PHNFADTVSA ATAAITSDPN FAGSRPRHNV 420 DHRWNASSRK QQ |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 6e-22 | 197 | 272 | 1 | 75 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00428 | DAP | Transfer from AT4G04450 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020575205.1 | 0.0 | LOW QUALITY PROTEIN: WRKY transcription factor 42-like | ||||
Swissprot | Q9XEC3 | 1e-139 | WRK42_ARATH; WRKY transcription factor 42 | ||||
TrEMBL | A0A2I0WV40 | 0.0 | A0A2I0WV40_9ASPA; Putative WRKY transcription factor 42 | ||||
STRING | XP_010252466.1 | 1e-165 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5265 | 36 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G04450.1 | 1e-118 | WRKY family protein |