PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_09539

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

M-type_MADS

Protein Properties

Length: 321aa MW: 35798.5 Da PI: 4.71

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_09539	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	87.7	6.4e-28	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k+ien++nrqvtfskRrng++KKA+ELSvLCd+++a+i+fs++g+l +s PEQU_09539 9 KKIENNTNRQVTFSKRRNGLIKKAYELSVLCDIDIALIMFSPSGRLSHFS 58 68********************************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	6.8E-38	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	29.604	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	7.19E-30	2	78	IPR002100	Transcription factor, MADS-box
CDD	cd00265	4.14E-37	2	75	No hit	No description
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.0E-26	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.4E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.0E-26	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.0E-26	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MGRVKLQIKK IENNTNRQVT FSKRRNGLIK KAYELSVLCD IDIALIMFSP SGRLSHFSGR 60 RRIEDVFERY INLPDHDRGS GANVSKMFLR STLSKLRCES DMAAQLANSG AADTRAEKLQ 120 QEIAECQQQL QTYTERLRLF EGFPAAAHSF TSLSELEASE KFLADALARV TEKKILLGDP 180 LQAYNPLTAN EQLYLQPQEE GMLDVYGYDL QPSDPNTFSN QGQPMQMTAD PLMSFRDQGM 240 NDPFAVQMEQ HVPATTWQQE IFAPLSPTPP WPLQPLLEPL EMAELPSEEG AMANCFQTAP 300 LDYHGTCGGG VYGSPAADNL G

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	1e-16	1	58	1	58	Myocyte-specific enhancer factor 2B
1tqe_Q	1e-16	1	58	1	58	Myocyte-specific enhancer factor 2B
1tqe_R	1e-16	1	58	1	58	Myocyte-specific enhancer factor 2B
1tqe_S	1e-16	1	58	1	58	Myocyte-specific enhancer factor 2B
6bz1_A	1e-16	1	58	1	58	MEF2 CHIMERA
6bz1_B	1e-16	1	58	1	58	MEF2 CHIMERA
6bz1_C	1e-16	1	58	1	58	MEF2 CHIMERA
6bz1_D	1e-16	1	58	1	58	MEF2 CHIMERA
6c9l_A	1e-16	1	58	1	58	Myocyte-specific enhancer factor 2B
6c9l_B	1e-16	1	58	1	58	Myocyte-specific enhancer factor 2B
6c9l_C	1e-16	1	58	1	58	Myocyte-specific enhancer factor 2B
6c9l_D	1e-16	1	58	1	58	Myocyte-specific enhancer factor 2B
6c9l_E	1e-16	1	58	1	58	Myocyte-specific enhancer factor 2B
6c9l_F	1e-16	1	58	1	58	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL30 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020580855.1	0.0	agamous-like MADS-box protein AGL66
Swissprot	Q1PFC2	4e-58	AGL66_ARATH; Agamous-like MADS-box protein AGL66
TrEMBL	A0A455LA80	1e-114	A0A455LA80_9ASPA; Agamous-like MADS-box protein
STRING	XP_008790798.1	9e-91	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4953	33	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77980.1	1e-54	AGAMOUS-like 66

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]