PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_09521

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

NAC

Protein Properties

Length: 397aa MW: 45363.4 Da PI: 6.7778

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_09521	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.6	2e-52	17	144	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 + pGfrFhPtdeelv +yL++k+++k+l++ e i+++diyk++PwdLpk+++++ekewyf+++rd+ky+++ r+nr+t++g+Wkatg+d++++s+ + + PEQU_09521 17 MLPGFRFHPTDEELVGFYLRRKIQQKPLSI-ELIRQLDIYKYDPWDLPKMAATGEKEWYFYCPRDRKYRNSARPNRVTSAGFWKATGTDRPIYSTeGVK 114 579*************************.89***********9888999***********************************84445 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +glkk+Lvfykgra kg ktdW+mhe+rl PEQU_09521 115 CIGLKKSLVFYKGRAAKGIKTDWMMHEFRL 144 5*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.53E-57	15	176	IPR003441	NAC domain
PROSITE profile	PS51005	56.38	17	176	IPR003441	NAC domain
Pfam	PF02365	1.1E-25	19	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
LREMEGKNDM DKVDEVMLPG FRFHPTDEEL VGFYLRRKIQ QKPLSIELIR QLDIYKYDPW 60 DLPKMAATGE KEWYFYCPRD RKYRNSARPN RVTSAGFWKA TGTDRPIYST EGVKCIGLKK 120 SLVFYKGRAA KGIKTDWMMH EFRLPSLSDP TISKRPMDKN FIPATEAWAI CRIFKKTNTA 180 AQKALTHSWF SSLPEATDFH KYSLPYVTNG AQFGSENISC KTEIGSLIQF GCSSGLEQHT 240 YPSLDVTNFK QFNLVSCMSP EMATSFTFSP PETSTDSKPL IDATSMLLNV SSAVLQDMEK 300 PSPSIDFGQQ QQSNGFTVTF PLEDNGNLGI EEEDMMYKKT VSSICDRNTH WGNMRYMNFP 360 FNLAPNPSDE WKPNLPWDSV FFPSEISMGY SSQKNDT

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

LREMEGKNDM DKVDEVMLPG FRFHPTDEEL VGFYLRRKIQ QKPLSIELIR QLDIYKYDPW  60
DLPKMAATGE KEWYFYCPRD RKYRNSARPN RVTSAGFWKA TGTDRPIYST EGVKCIGLKK  120
SLVFYKGRAA KGIKTDWMMH EFRLPSLSDP TISKRPMDKN FIPATEAWAI CRIFKKTNTA  180
AQKALTHSWF SSLPEATDFH KYSLPYVTNG AQFGSENISC KTEIGSLIQF GCSSGLEQHT  240
YPSLDVTNFK QFNLVSCMSP EMATSFTFSP PETSTDSKPL IDATSMLLNV SSAVLQDMEK  300
PSPSIDFGQQ QQSNGFTVTF PLEDNGNLGI EEEDMMYKKT VSSICDRNTH WGNMRYMNFP  360
FNLAPNPSDE WKPNLPWDSV FFPSEISMGY SSQKNDT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-53	6	182	5	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-53	6	182	5	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-53	6	182	5	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-53	6	182	5	171	NO APICAL MERISTEM PROTEIN
4dul_A	1e-53	6	182	5	171	NAC domain-containing protein 19
4dul_B	1e-53	6	182	5	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020580951.1	0.0	protein FEZ-like
Swissprot	Q9ZVH0	1e-102	FEZ_ARATH; Protein FEZ
TrEMBL	A0A2I0W9Q4	0.0	A0A2I0W9Q4_9ASPA; Protein FEZ
STRING	XP_008784123.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3366	38	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-102	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]