PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_09491 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | MYB | ||||||||
Protein Properties | Length: 304aa MW: 34198.4 Da PI: 7.2354 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60 | 5e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+Wk+I+ g+ R+ k+c++rw +yl PEQU_09491 14 KGPWTPEEDIILVSYIQEHGPGNWKAIPTNSGLSRCSKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.9 | 1.5e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E+ l++++ ++lG++ W++Ia++++ Rt++++k++w++++ PEQU_09491 67 RGSFTDQEENLIIHLQALLGNR-WAAIASYLP-ERTDNDIKNYWNTHM 112 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.938 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.07E-31 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.4E-16 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.2E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-24 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.76E-12 | 16 | 61 | No hit | No description |
SMART | SM00717 | 1.1E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.815 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.7E-14 | 67 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-24 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.65E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MGRPPCCDKF GVKKGPWTPE EDIILVSYIQ EHGPGNWKAI PTNSGLSRCS KSCRLRWTNY 60 LRPGIKRGSF TDQEENLIIH LQALLGNRWA AIASYLPERT DNDIKNYWNT HMKKKLRRME 120 NEDGILPASG FSNYKPMVKG QWERRLQTDI NMAKQALHEA LYMEKPSFLY ESKPSCSSHS 180 CSTPPSSTTY ASSTENISRL LENWIRKTPK NSAKSAQHHV NELVNVGADS TSSDGTITSA 240 ANNHMVSPET SLFQVDSKPS LEERFPLSLI ETWLFDENCY GGGNGSNINV PDLSLDDASH 300 ELFI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 4e-27 | 14 | 116 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 6e-27 | 14 | 116 | 27 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 4e-27 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 4e-27 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020580904.1 | 0.0 | myb-related protein 306-like | ||||
Swissprot | P81392 | 1e-106 | MYB06_ANTMA; Myb-related protein 306 | ||||
TrEMBL | A0A2I0XBX5 | 1e-141 | A0A2I0XBX5_9ASPA; Myb-related protein 306 | ||||
STRING | XP_010258354.1 | 1e-123 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP229 | 38 | 296 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47600.1 | 4e-98 | myb domain protein 94 |
Publications ? help Back to Top | |||
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