PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_09423
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB_related
Protein Properties Length: 130aa    MW: 14723.5 Da    PI: 8.8726
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_09423genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.69.3e-164289148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed  l+d vk++G g+W+t+ r   ++R++k+c++rw ++l
       PEQU_09423 42 KGPWTAAEDAVLIDFVKKHGEGNWNTVQRNTWLRRCGKSCRLRWANHL 89
                     79******************************************9996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.5733793IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-214092IPR009057Homeodomain-like
SMARTSM007171.7E-114191IPR001005SANT/Myb domain
SuperFamilySSF466897.45E-2443119IPR009057Homeodomain-like
CDDcd001674.28E-104489No hitNo description
PfamPF139213.4E-1345104No hitNo description
Gene3DG3DSA:1.10.10.602.6E-1293124IPR009057Homeodomain-like
PROSITE profilePS512948.22394130IPR017930Myb domain
SMARTSM007171394130IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MCSAKSDADT EKQPKEQVDS SSNDEDSRSG SPSTREVSVL KKGPWTAAED AVLIDFVKKH  60
GEGNWNTVQR NTWLRRCGKS CRLRWANHLR PELKKGALTP EEEESIIQMH AKFGNKWAQM  120
AARVSIYYLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-1939121182C-Myb DNA-Binding Domain
1msf_C1e-1939121182C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter. {ECO:0000269|PubMed:9150608}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin in aleurone cells. {ECO:0000269|PubMed:9150608}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020571067.17e-85transcription factor GAMYB-like
RefseqXP_020571069.17e-85transcription factor GAMYB-like
SwissprotA2WW874e-50GAM1_ORYSI; Transcription factor GAMYB
TrEMBLA0A2I0VLF53e-64A0A2I0VLF5_9ASPA; Transcription factor GAMYB
STRINGBRADI2G53010.14e-50(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39473664
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11440.17e-44myb domain protein 65