PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_09286
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family GRAS
Protein Properties Length: 433aa    MW: 50286.4 Da    PI: 7.0167
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_09286genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS367.42e-112614293374
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                 +lL++cA+  +sgd+ +a +lL+++s+++sp+gd+ qRla+yf+++L+arla+++se+y++l +++ +   +s+ l+a++l+  ++P+ k+++ ++Nq+
  PEQU_09286  61 TLLVHCAQTYASGDKPRACELLKQISQHSSPYGDASQRLAHYFANGLKARLAGTGSEVYHSLVSKRRT---VSDMLKAYQLYLACFPFKKITYHLTNQT 156
                 79************************************************************999998...**************************** PP

        GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                 Il+ +++++rvHi+Df+i  G+QWp+++++L++Rp++pp+lRiTg++ pe++   +e+++etg+rLakf e++gvpfe++v va  ++++++e+L++++
  PEQU_09286 157 ILDTIQHATRVHILDFGIDFGFQWPSFIKQLSDRPDEPPKLRITGIEIPEPDfgPTERIQETGRRLAKFVERFGVPFEYHV-VAAMFDEVRVEDLHIEE 254
                 **************************************************9999**************************9.799************** PP

        GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297
                 +E l+Vn+ ++lh   de+v+ + +rd+vL+++++l+P ++v v  +  ++++ F+  f ea++y+sa+fd+l++++pre+e+r+ vEr l ++++ nv
  PEQU_09286 255 DELLVVNCLFRLHDPADETVTEHCPRDKVLNTIRELNPAMFVNVVVNGTYGAPFFMSSFHEAMYYFSAVFDMLDSTAPRENEQRMLVERDLYRKRLINV 353
                 *************************************************************************************************** PP

        GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 ++ceg e rer et+++W+ r+ +aGF+++++s++ +k+a++ +++++ + ++++e+ ++++ gWk+r  + +S W+
  PEQU_09286 354 ISCEGLE-RERPETYKQWQVRILRAGFEQLSISKELVKKARAGVKTFYHKDFNMDEDGKWMLEGWKGRIFYGLSTWK 429
                 *******.9***************************************889*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.06533409IPR005202Transcription factor GRAS
PfamPF035146.8E-11061429IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
ELFDDVLLCS CERFSQVVNV IREKMFKEAG TDSKNSNPNE SDVHRKSSWK KQQKEVVDFN  60
TLLVHCAQTY ASGDKPRACE LLKQISQHSS PYGDASQRLA HYFANGLKAR LAGTGSEVYH  120
SLVSKRRTVS DMLKAYQLYL ACFPFKKITY HLTNQTILDT IQHATRVHIL DFGIDFGFQW  180
PSFIKQLSDR PDEPPKLRIT GIEIPEPDFG PTERIQETGR RLAKFVERFG VPFEYHVVAA  240
MFDEVRVEDL HIEEDELLVV NCLFRLHDPA DETVTEHCPR DKVLNTIREL NPAMFVNVVV  300
NGTYGAPFFM SSFHEAMYYF SAVFDMLDST APRENEQRML VERDLYRKRL INVISCEGLE  360
RERPETYKQW QVRILRAGFE QLSISKELVK KARAGVKTFY HKDFNMDEDG KWMLEGWKGR  420
IFYGLSTWKP TCF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-52374301380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020571206.10.0scarecrow-like protein 9
SwissprotO809331e-148SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A3G2CI740.0A0A3G2CI74_CYMEN; Scarecrow-like protein 14-like
STRINGXP_008777105.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150538118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-151GRAS family protein