PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_09277 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | MYB | ||||||||
Protein Properties | Length: 541aa MW: 60080.6 Da PI: 8.6658 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.6 | 2.8e-18 | 58 | 104 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+ Ede l +av+++ g++Wk+Ia+ ++ gRt+ qc +rwqk+l PEQU_09277 58 KGGWTPNEDETLRHAVELHKGRNWKKIAESVP-GRTEVQCLHRWQKVL 104 688*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 57.1 | 4.2e-18 | 110 | 156 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ++++v+++G+ W+ Ia ++ gR +kqc++rw+++l PEQU_09277 110 KGPWTPEEDNVIIELVAKYGPTKWSVIAGSLP-GRIGKQCRERWHNHL 156 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 54.8 | 2.1e-17 | 162 | 205 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT eE++ l +a+ q+G++ W+ Ia+ ++ gR+++++k++w++ PEQU_09277 162 KDAWTSEEELELMKAHLQYGNK-WAEIAKVLP-GRSDNSIKNHWNS 205 679*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.494 | 53 | 104 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.03E-16 | 54 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-14 | 57 | 106 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.9E-17 | 58 | 104 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-23 | 60 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.49E-13 | 61 | 104 | No hit | No description |
PROSITE profile | PS51294 | 31.178 | 105 | 160 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.07E-31 | 107 | 203 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.2E-17 | 109 | 158 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-17 | 110 | 156 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.01E-15 | 112 | 156 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-26 | 117 | 162 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.044 | 161 | 211 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-15 | 161 | 209 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-15 | 162 | 205 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-21 | 163 | 210 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.70E-12 | 164 | 207 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 541 aa Download sequence Send to blast |
MNYLKTEESC VENKQSVTAS CSSISEGSSG FSTFSPTCSP VTSSPNHRRT SGPIRRAKGG 60 WTPNEDETLR HAVELHKGRN WKKIAESVPG RTEVQCLHRW QKVLNPKLIK GPWTPEEDNV 120 IIELVAKYGP TKWSVIAGSL PGRIGKQCRE RWHNHLNPEI RKDAWTSEEE LELMKAHLQY 180 GNKWAEIAKV LPGRSDNSIK NHWNSSLRKR SEVYVKTGKF PHIQKSVIRN AAKDGTNSGD 240 TQLFFCSSKE LHTSGNTVLG SCLTVPRSLP TETPKAVSQK DEVLTLSAQV SELNATLDIA 300 VRLSDSSEIN LVQNRSESVV NLDAYSFNGE VHRNEEPFET KLLPDSDNVG FLCYKPPELE 360 DLGAAAFSPI LFGHRSMQPT SDHQMISSPI SYSTPSSANV PRSEQPSVES ILKGAARSFP 420 NTPSIIKRRK EVHISLPPET MHTNEIKIQD DCTPKEGSIS KQSKLFTSPV NISGGSLDYG 480 KNLNFSPVYQ LRSKRKATFK SLEKQLDFTM EDADLESNTK SSSLAANKNS CSPTNMQFLS 540 V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-67 | 57 | 210 | 5 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-67 | 57 | 210 | 5 | 158 | MYB PROTO-ONCOGENE PROTEIN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020571175.1 | 0.0 | transcription factor MYB3R-3 isoform X1 | ||||
Swissprot | Q0JHU7 | 1e-128 | MB3R2_ORYSJ; Transcription factor MYB3R-2 | ||||
TrEMBL | A0A455LA96 | 0.0 | A0A455LA96_9ASPA; Transcription factor MYB3R-3 isoform X4 | ||||
STRING | XP_008802730.1 | 1e-179 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3099 | 38 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09370.1 | 1e-114 | myb domain protein 3r-3 |
Publications ? help Back to Top | |||
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