PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_09152 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | MYB | ||||||||
Protein Properties | Length: 172aa MW: 20316.9 Da PI: 6.6791 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56 | 9.2e-18 | 7 | 54 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT++Ed++lv+ v+ +G ++W+ Ia+ g+ Rt+k+c++rw +yl PEQU_09152 7 RGPWTEQEDLQLVCFVRIFGDRRWDFIANLSGLERTGKSCRLRWVNYL 54 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.9 | 2.1e-17 | 61 | 105 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 gr+T+eE+ l+++++ ++G++ W+ Ia +++ gRt++++k++w++++ PEQU_09152 61 GRMTPEEEHLILELHSKWGNK-WSQIAGKLP-GRTDNEIKNYWRTHM 105 89*******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.463 | 2 | 54 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.48E-30 | 5 | 101 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.6E-15 | 6 | 56 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-16 | 7 | 54 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-20 | 8 | 61 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.64E-10 | 9 | 54 | No hit | No description |
PROSITE profile | PS51294 | 24.892 | 55 | 109 | IPR017930 | Myb domain |
SMART | SM00717 | 9.9E-15 | 59 | 107 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.8E-16 | 61 | 104 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.8E-25 | 62 | 107 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.03E-9 | 62 | 105 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MKEGTRRGPW TEQEDLQLVC FVRIFGDRRW DFIANLSGLE RTGKSCRLRW VNYLHPGLKH 60 GRMTPEEEHL ILELHSKWGN KWSQIAGKLP GRTDNEIKNY WRTHMRKMAQ EKKRNSPSSS 120 SSSSSFSNGM ENQEEVSFIV TMAEEKEEEV KVEVYPMDQL WNEMEFSSVW EC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 6e-27 | 7 | 107 | 4 | 103 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020577748.1 | 1e-126 | myb-related protein MYBAS2-like | ||||
Swissprot | Q9LX82 | 1e-68 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A2I0X4M1 | 7e-77 | A0A2I0X4M1_9ASPA; Myb-related protein MYBAS2 | ||||
STRING | XP_008457537.1 | 1e-70 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP636 | 37 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.1 | 5e-67 | myb domain protein 48 |
Publications ? help Back to Top | |||
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