PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_09074 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | MYB | ||||||||
Protein Properties | Length: 229aa MW: 26726 Da PI: 6.9624 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.5 | 1.3e-17 | 36 | 81 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W +eEd +l+ +v +G+ +W++Ia++++ gR++k+c++rw++ PEQU_09074 36 RGHWRPEEDSKLKALVSIYGPQNWNLIAEKLN-GRSGKSCRLRWFNQ 81 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 53.1 | 7.4e-17 | 88 | 131 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+ E+e+l a++++G++ W+ Iar ++ gRt++ +k++w+ PEQU_09074 88 RSAFTEVEEEKLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 131 789*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.088 | 31 | 82 | IPR017930 | Myb domain |
SMART | SM00717 | 5.2E-15 | 35 | 84 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-16 | 36 | 81 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.31E-28 | 36 | 129 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-25 | 37 | 89 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.39E-13 | 39 | 80 | No hit | No description |
PROSITE profile | PS51294 | 24.755 | 83 | 137 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-13 | 87 | 135 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-13 | 88 | 130 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.89E-10 | 90 | 130 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.6E-20 | 90 | 136 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MGTSETNEVL EENLSRADAE EENINESLGQ SNLCARGHWR PEEDSKLKAL VSIYGPQNWN 60 LIAEKLNGRS GKSCRLRWFN QLDPTINRSA FTEVEEEKLM AAHRLYGNKW AMIARLFPGR 120 TDNAVKNHWH VIMARKYREQ SNAYRRRKLS QAMDRRLEEI TPNHPFFSSS IVDYSSSSFH 180 LFPNGENNSL LSHFGSYTEE KPFDFYSGMF YLFLAVLFLA IVQDWLFYH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-33 | 35 | 136 | 6 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020579779.1 | 1e-154 | transcription factor MYB52-like | ||||
Swissprot | Q9SEZ4 | 2e-71 | MY105_ARATH; Transcription factor MYB105 | ||||
TrEMBL | A0A2I0WDZ7 | 1e-131 | A0A2I0WDZ7_9ASPA; Transcription factor MYB44 | ||||
STRING | XP_008802623.1 | 8e-87 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 3e-73 | myb domain protein 105 |
Publications ? help Back to Top | |||
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