PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_09064
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB
Protein Properties Length: 377aa    MW: 41213.2 Da    PI: 6.9407
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_09064genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.61.6e-091445132
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                     +g+WT eEd++l+ +++++G g+W++ +++ g
       PEQU_09064 14 KGPWTSEEDQKLLSYIEEHGHGSWRALPAKAG 45
                     79***********************9998877 PP

2Myb_DNA-binding51.91.7e-1692137148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
       PEQU_09064  92 RGKFSMQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 137
                      89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-23589IPR009057Homeodomain-like
PROSITE profilePS5009010.29986IPR017877Myb-like domain
SuperFamilySSF466899.72E-81142IPR009057Homeodomain-like
SMARTSM007171.6E-81388IPR001005SANT/Myb domain
PfamPF002495.5E-111486IPR001005SANT/Myb domain
CDDcd001676.24E-81686No hitNo description
SuperFamilySSF466897.1E-2172145IPR009057Homeodomain-like
PROSITE profilePS5129425.87887141IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.8E-2690141IPR009057Homeodomain-like
SMARTSM007171.3E-1591139IPR001005SANT/Myb domain
PfamPF002497.7E-1692137IPR001005SANT/Myb domain
CDDcd001673.13E-1194137No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MGRSPCCEKI GLKKGPWTSE EDQKLLSYIE EHGHGSWRAL PAKAGESISK FEFFLLPLIY  60
VLHILLKLTG LQRCGKSCRL RWTNYLRPDI KRGKFSMQEE QTIIQLHALL GNRWSAIATH  120
LPKRTDNEIK NYWNTHLKKQ LAKLGIDPVT HKSKCDGLAA ADGHARSTAN LNHMAQWESA  180
RLEAEARLVR ESKLRSSAPP PTFPQQHLPS PPAPVTMTTV ASPSLDVLQA WHGVWPNPAD  240
NSQAGSQSID LESPTSTLSF SENFFPLRIQ GVGSNNDSNG EKSGFLLDTA EAFADAEANS  300
WLGRSCAGGF QAHYTGMPMG NTNKKNSTES CDDSDNAGGS CVDVEGGEGE GEENKSYWSS  360
ILNLVNSSSP SNSPPAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-23121415108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7694810.0KF769481.1 Phalaenopsis equestris MYB transcription factor 16 (MYB16) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020579747.10.0myb-related protein 306-like
RefseqXP_020579748.10.0myb-related protein 306-like
RefseqXP_020579749.10.0myb-related protein 306-like
SwissprotQ9LE631e-105MY106_ARATH; Transcription factor MYB106
TrEMBLA0A096ZX440.0A0A096ZX44_PHAEQ; MYB transcription factor 16
STRINGXP_010258093.11e-129(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56093758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.11e-100myb domain protein 106