PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_09064 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | MYB | ||||||||
Protein Properties | Length: 377aa MW: 41213.2 Da PI: 6.9407 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.6 | 1.6e-09 | 14 | 45 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +g+WT eEd++l+ +++++G g+W++ +++ g PEQU_09064 14 KGPWTSEEDQKLLSYIEEHGHGSWRALPAKAG 45 79***********************9998877 PP | |||||||
2 | Myb_DNA-binding | 51.9 | 1.7e-16 | 92 | 137 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l PEQU_09064 92 RGKFSMQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 137 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.7E-23 | 5 | 89 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 10.29 | 9 | 86 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 9.72E-8 | 11 | 42 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-8 | 13 | 88 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.5E-11 | 14 | 86 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.24E-8 | 16 | 86 | No hit | No description |
SuperFamily | SSF46689 | 7.1E-21 | 72 | 145 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.878 | 87 | 141 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-26 | 90 | 141 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-15 | 91 | 139 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.7E-16 | 92 | 137 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.13E-11 | 94 | 137 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MGRSPCCEKI GLKKGPWTSE EDQKLLSYIE EHGHGSWRAL PAKAGESISK FEFFLLPLIY 60 VLHILLKLTG LQRCGKSCRL RWTNYLRPDI KRGKFSMQEE QTIIQLHALL GNRWSAIATH 120 LPKRTDNEIK NYWNTHLKKQ LAKLGIDPVT HKSKCDGLAA ADGHARSTAN LNHMAQWESA 180 RLEAEARLVR ESKLRSSAPP PTFPQQHLPS PPAPVTMTTV ASPSLDVLQA WHGVWPNPAD 240 NSQAGSQSID LESPTSTLSF SENFFPLRIQ GVGSNNDSNG EKSGFLLDTA EAFADAEANS 300 WLGRSCAGGF QAHYTGMPMG NTNKKNSTES CDDSDNAGGS CVDVEGGEGE GEENKSYWSS 360 ILNLVNSSSP SNSPPAV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-23 | 12 | 141 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Functions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF769481 | 0.0 | KF769481.1 Phalaenopsis equestris MYB transcription factor 16 (MYB16) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020579747.1 | 0.0 | myb-related protein 306-like | ||||
Refseq | XP_020579748.1 | 0.0 | myb-related protein 306-like | ||||
Refseq | XP_020579749.1 | 0.0 | myb-related protein 306-like | ||||
Swissprot | Q9LE63 | 1e-105 | MY106_ARATH; Transcription factor MYB106 | ||||
TrEMBL | A0A096ZX44 | 0.0 | A0A096ZX44_PHAEQ; MYB transcription factor 16 | ||||
STRING | XP_010258093.1 | 1e-129 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5609 | 37 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01140.1 | 1e-100 | myb domain protein 106 |