PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_09021 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | LBD | ||||||||
Protein Properties | Length: 190aa MW: 20378.3 Da PI: 9.4601 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 116.9 | 1.2e-36 | 25 | 128 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq...pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +C aCk+lrrkCa++Cv+a +f eq p++fa+vhk+FGa+nv+k+lk +p+++r++a+ +++yeA+ar+ dPv G+vg+i +l++q++ql++el+ PEQU_09021 25 PCGACKFLRRKCAAGCVFAAHFGREQvssPARFAAVHKVFGARNVSKFLKLVPPDHRREAVVTVCYEAQARLCDPVLGCVGTIIALHHQVAQLQTELSI 123 7*********************77664337********************************************************************* PP DUF260 97 lkeel 101 ++++l PEQU_09021 124 VQSQL 128 99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.545 | 24 | 128 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-36 | 25 | 125 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MLSTASRKTK TAAKPSGTPF STTSPCGACK FLRRKCAAGC VFAAHFGREQ VSSPARFAAV 60 HKVFGARNVS KFLKLVPPDH RREAVVTVCY EAQARLCDPV LGCVGTIIAL HHQVAQLQTE 120 LSIVQSQLIN SRLAAAAATA AAGVFRYSET QQQLVAIHPT YSTSSVSNNF NFSSFPSSVF 180 DVCDSHSLEQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-34 | 24 | 129 | 10 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-34 | 24 | 129 | 10 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020699320.1 | 3e-77 | LOB domain-containing protein 20 | ||||
Swissprot | Q9SRV3 | 1e-50 | LBD20_ARATH; LOB domain-containing protein 20 | ||||
TrEMBL | A0A2I0VT39 | 8e-76 | A0A2I0VT39_9ASPA; LOB domain-containing protein 20 | ||||
STRING | XP_008777051.1 | 8e-55 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14085 | 25 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 1e-51 | LOB domain-containing protein 20 |