PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_08788 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | Trihelix | ||||||||
Protein Properties | Length: 317aa MW: 35917.8 Da PI: 9.5632 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 42.4 | 1.8e-13 | 23 | 107 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergf.erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + aL+ea ++ +l+rg+l++++W++v++ + + g ++++ qCk++++ l+k+yk +k ++ st+p+f++++ PEQU_08788 23 CWSEGATEALVEAWGDRFLHLNRGNLRQKDWKDVADSVnarqDAVGNpRKTSGQCKNRIDTLKKKYKLEKSKPGR------STWPFFSRID 107 7*************************************998855555266******************9999997......58****9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 9.6E-24 | 21 | 107 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MNFRRRAAAA ATVTSGAGMR EDCWSEGATE ALVEAWGDRF LHLNRGNLRQ KDWKDVADSV 60 NARQDAVGNP RKTSGQCKNR IDTLKKKYKL EKSKPGRSTW PFFSRIDLLV GHSPEKASLG 120 IKVKQRNPNS SSATPPHNLL LSSWGSSRVR TNLPDAAQSS REGGGVGYGD FDGREDMDRT 180 EEVGKIPLFG YLDIQESRKP GCGLGVFSSG DDGGGGEDRG DFREFVRAVE KIGDIYERVE 240 RSKLQQAIEL ERQRMEFEKE IEIQRMKVFM ETQLELQRMK WRKCNSDSGK FVMIYEIVFL 300 VSIILLLHIR IKILDHF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020585855.1 | 0.0 | trihelix transcription factor ASIL1-like | ||||
Swissprot | Q9LJG8 | 8e-30 | ASIL2_ARATH; Trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A2I0WBH6 | 1e-132 | A0A2I0WBH6_9ASPA; Uncharacterized protein | ||||
STRING | XP_008789150.1 | 2e-63 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2065 | 32 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11100.1 | 4e-29 | sequence-specific DNA binding transcription factors |