PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_08766

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

Protein Properties

Length: 188aa MW: 22588.2 Da PI: 8.4429

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_08766	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	40.3	5.5e-13	108	160	34	86
SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 + ++d+++rsW ++l+ ++s+ yv+++GW++F ++ +L+ D+v+F++ PEQU_08766 108 VWCEFKDRTNRSWAFQLCLLNNSQVYVFSAGWNKFFREMELRGSDIVLFYHYM 160 456799********************************************643 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.1E-13	72	161	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.01E-8	72	158	No hit	No description
SuperFamily	SSF101936	4.71E-13	72	159	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	9.164	73	179	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.8E-10	108	159	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MRNLLLTGVT INEPLFHGIH NSEVIINMIK DGSYERNYKN FLYYRCHDIP YGDSVVMPTS 60 LDAIKGLIFK ELFRKEILLT ECQNQNFLIL PTKAQLCFEP LKSYRGEVWC EFKDRTNRSW 120 AFQLCLLNNS QVYVFSAGWN KFFREMELRG SDIVLFYHYM DLRNFPDRFS YMIDVIRGVR 180 YPWLLRQY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020585959.1	1e-141	AP2/ERF and B3 domain-containing transcription factor At1g50680-like

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50680.1	8e-23	RAV family protein