PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_08742 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | TALE | ||||||||
Protein Properties | Length: 136aa MW: 15873.7 Da PI: 5.8454 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30.2 | 7.8e-10 | 78 | 112 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yp+++++ LA+ +gL+++q+ +WF N+R ++ PEQU_08742 78 KWPYPTESDKIALAETTGLDQKQINNWFINQRKRH 112 569*****************************985 PP | |||||||
2 | ELK | 38.7 | 2.1e-13 | 32 | 53 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 +LK+ LlrKYsgyL+sLkqEFs PEQU_08742 32 DLKEKLLRKYSGYLSSLKQEFS 53 69*******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51213 | 11.209 | 32 | 52 | IPR005539 | ELK domain |
Pfam | PF03789 | 1.5E-10 | 32 | 53 | IPR005539 | ELK domain |
SMART | SM01188 | 5.7E-7 | 32 | 53 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.681 | 52 | 115 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.56E-21 | 53 | 128 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.9E-12 | 54 | 119 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-29 | 57 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.62E-11 | 64 | 115 | No hit | No description |
Pfam | PF05920 | 1.8E-18 | 72 | 111 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 90 | 113 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 136 aa Download sequence Send to blast |
SETDEAVGSS DEELSGGELD APESFLKGEE RDLKEKLLRK YSGYLSSLKQ EFSKKRKKGK 60 LPKEARQILF DWWTAHYKWP YPTESDKIAL AETTGLDQKQ INNWFINQRK RHWKPAENMQ 120 FSIMDNSSTS SFFTDD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 47 | 56 | LKQEFSKKRK |
2 | 53 | 57 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ276389 | 1e-125 | AJ276389.1 Dendrobium grex Madame Thong-IN mRNA for knotted1-like homeobox protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020585897.1 | 3e-96 | homeobox protein knotted-1-like 2 | ||||
Swissprot | Q84JS6 | 4e-55 | KNAT6_ARATH; Homeobox protein knotted-1-like 6 | ||||
TrEMBL | Q9M3Y7 | 3e-76 | Q9M3Y7_9ASPA; Knotted1-like homeobox protein | ||||
STRING | ERN02729 | 4e-62 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1698 | 38 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23380.1 | 2e-54 | KNOTTED1-like homeobox gene 6 |
Publications ? help Back to Top | |||
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