PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_08685

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

SRS

Protein Properties

Length: 264aa MW: 27495.2 Da PI: 8.1158

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_08685	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	217	4.1e-67	40	202	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrelkskkqsalsstklssaeskke 99 sg+ +CqdCGnqakkdC+h+RCRtCCksrgf+C+th+kstWvpaa+rrerq ++a + a a + +++a+k++r s++++++s+t++s++ ++++ PEQU_08685 40 SGSPTCQDCGNQAKKDCTHRRCRTCCKSRGFECSTHIKSTWVPAARRRERQLSGTTACAAAFAGSstSTSAPKKPRLI-SSQTTTTSHTSTSNT-PPRS 136 67889*******************************************9876666555544432266667777764.556666666666555.6778 PP DUF702 100 letss...........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++tss lP +v+++avf+cvrv+svddge+e+aYq++v+igGhvfkG+LydqG+++ PEQU_08685 137 FDTSSshqaeasfrehLPGHVRAPAVFKCVRVTSVDDGEDEYAYQAVVNIGGHVFKGFLYDQGVDD 202 88888899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	3.0E-63	43	201	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	3.5E-27	44	86	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	4.8E-30	152	200	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MLFSGEHPII PLLAAAPCHG QPTPSQNPNP NSSGILSVSS GSPTCQDCGN QAKKDCTHRR 60 CRTCCKSRGF ECSTHIKSTW VPAARRRERQ LSGTTACAAA FAGSSTSTSA PKKPRLISSQ 120 TTTTSHTSTS NTPPRSFDTS SSHQAEASFR EHLPGHVRAP AVFKCVRVTS VDDGEDEYAY 180 QAVVNIGGHV FKGFLYDQGV DDGRGDFTES SPMTGGSNNN AVPNLSELHL GAGRSGGASS 240 SLPSDVYSGG GGMLGGATYG NAIN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020585827.1	1e-173	protein LATERAL ROOT PRIMORDIUM 1-like
Swissprot	Q94CK9	2e-71	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A2H3YSY9	8e-99	A0A2H3YSY9_PHODC; LOW QUALITY PROTEIN: protein LATERAL ROOT PRIMORDIUM 1-like
STRING	XP_008803345.1	1e-98	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3579	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	2e-62	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]