PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PEQU_08600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 189aa MW: 20279 Da PI: 8.4904 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136.7 | 8.6e-43 | 33 | 132 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC++dCv+apyf a+qp+kf vh++FGasnv+kllk++p+++reda++sl+yeA++r+rdPvyG+vgvi+ l+++l++l+ el+ +++ PEQU_08600 33 PCAACKFLRRKCQPDCVFAPYFLADQPQKFISVHRVFGASNVTKLLKEIPQKDREDAVNSLAYEADMRIRDPVYGCVGVISILHHELRKLQLELSFARS 131 7*********************************************************************************************99987 PP DUF260 100 e 100 e PEQU_08600 132 E 132 6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.747 | 32 | 133 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-42 | 33 | 130 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 189 aa Download sequence Send to blast |
HMTSLTPPSS FPPTSPPPPP SSASGGSATA SSPCAACKFL RRKCQPDCVF APYFLADQPQ 60 KFISVHRVFG ASNVTKLLKE IPQKDREDAV NSLAYEADMR IRDPVYGCVG VISILHHELR 120 KLQLELSFAR SELARYQFNP PQPSADLWPG NQFGFDATAS VGFGMNVGGN LIFRAPSARA 180 TGGDGVGPT |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-48 | 30 | 136 | 8 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-48 | 30 | 136 | 8 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020587814.1 | 1e-137 | LOB domain-containing protein 6-like | ||||
Swissprot | A1YKY7 | 3e-56 | IAL1_MAIZE; Protein IAL1 | ||||
TrEMBL | A0A2I0WSN3 | 3e-89 | A0A2I0WSN3_9ASPA; LOB domain-containing protein 6 | ||||
STRING | VIT_00s0340g00090.t01 | 4e-56 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2267 | 38 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G65620.4 | 4e-48 | LBD family protein |