PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_08546 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | ERF | ||||||||
Protein Properties | Length: 329aa MW: 36515.8 Da PI: 4.9653 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.6 | 1.5e-18 | 119 | 169 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+++AeIrdp+ r r++lg++ taeeAak ++ a+ +l+g PEQU_08546 119 PRFRGVRRRP-WGKFAAEIRDPT----RrVRVWLGTYNTAEEAAKVYDSAAIQLRG 169 689*******.**********84....34*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.07E-29 | 119 | 176 | No hit | No description |
Pfam | PF00847 | 1.6E-12 | 119 | 169 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.99E-20 | 120 | 177 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-28 | 120 | 177 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.288 | 120 | 177 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-32 | 120 | 183 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-9 | 121 | 132 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-9 | 143 | 159 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
WKTMEGQYLA QLKHSVHFEV TSKPIHHLSR RPAMPSFAGA NTVRFFCDDV DATDSDSDSD 60 SGEPCFGRRR VKRYVQEIRF EERLDMAAGE GKAVKASAGK RKKKGIASSE KQQPITGAPR 120 FRGVRRRPWG KFAAEIRDPT RRVRVWLGTY NTAEEAAKVY DSAAIQLRGP DAATNFSSAP 180 AVEEPPRPLP ARNLSMTNLS VSGGYESSED SHNICSPTSV LRGFSSSTAV QDEPEKPSSS 240 GSISLPEELA GELMAFDEMP LYNDFLDLSA TEPRFFENPM DQFGLFARES VIPNTCFDLR 300 SSTYEDGDDL FEEIGDLFPL EPLPPVTIF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-17 | 120 | 176 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020587764.1 | 0.0 | ethylene-responsive transcription factor CRF2-like | ||||
TrEMBL | A0A455LAD9 | 0.0 | A0A455LAD9_9ASPA; Ethylene-responsive transcription factor CRF-like protein | ||||
STRING | XP_008783954.1 | 4e-88 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1690 | 36 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23750.2 | 3e-40 | cytokinin response factor 2 |