PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_08525
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family NAC
Protein Properties Length: 324aa    MW: 37112.7 Da    PI: 7.5795
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_08525genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.11.4e-52111401128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                 +ppGfrFhPt+eel+ +yL+kkv+ + ++l +vi++vd++k+ePwdL+ k k+ +  ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++ ++
  PEQU_08525  11 VPPGFRFHPTEEELLYYYLRKKVAYEAIDL-DVIRDVDLNKLEPWDLNdKcKIGSgPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIHISS 108
                 69****************************.9***************843444443456**************************************** PP

         NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                 ++ +g++ktLvfy+grap+g ktdW+mheyrl
  PEQU_08525 109 SKRIGMRKTLVFYTGRAPHGLKTDWIMHEYRL 140
                 ******************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.89E-597160IPR003441NAC domain
PROSITE profilePS5100557.71211160IPR003441NAC domain
PfamPF023653.0E-2712140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003002Biological Processregionalization
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0010455Biological Processpositive regulation of cell fate commitment
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MNSNGNGQLA VPPGFRFHPT EEELLYYYLR KKVAYEAIDL DVIRDVDLNK LEPWDLNDKC  60
KIGSGPQNEW YFFSHKDKKY PTGTRTNRAT TAGFWKATGR DKAIHISSSK RIGMRKTLVF  120
YTGRAPHGLK TDWIMHEYRL DDDTSEIQED SWVVCRVFKK KSLYKCNNIP SDQILPQETN  180
LNLFKTTPCP NLFPQTQPHP SFDHFSFLNN NNNNNNNNNT MHLPQLLNSD QPSAAAVAAS  240
ASFITPIDLE CSQNLMKLTG DWSILDKLLA SNHQSQLDQF FHVKYNSTSS SSQQLMEMSS  300
SAQRFFPLQY FGCEADLLKF SKEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-51816214167NO APICAL MERISTEM PROTEIN
1ut4_B5e-51816214167NO APICAL MERISTEM PROTEIN
1ut7_A5e-51816214167NO APICAL MERISTEM PROTEIN
1ut7_B5e-51816214167NO APICAL MERISTEM PROTEIN
3swm_A5e-51816217170NAC domain-containing protein 19
3swm_B5e-51816217170NAC domain-containing protein 19
3swm_C5e-51816217170NAC domain-containing protein 19
3swm_D5e-51816217170NAC domain-containing protein 19
3swp_A5e-51816217170NAC domain-containing protein 19
3swp_B5e-51816217170NAC domain-containing protein 19
3swp_C5e-51816217170NAC domain-containing protein 19
3swp_D5e-51816217170NAC domain-containing protein 19
4dul_A5e-51816214167NAC domain-containing protein 19
4dul_B5e-51816214167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00250DAPTransfer from AT1G79580Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020587811.10.0protein SOMBRERO
SwissprotQ9MA171e-101SMB_ARATH; Protein SOMBRERO
TrEMBLA0A2I0XBM90.0A0A2I0XBM9_9ASPA; Protein SOMBRERO
STRINGXP_008783883.11e-137(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34613781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.35e-92NAC family protein
Publications ? help Back to Top
  1. Fendrych M, et al.
    Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis.
    Curr. Biol., 2014. 24(9): p. 931-40
    [PMID:24726156]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  3. Karve R,Suárez-Román F,Iyer-Pascuzzi AS
    The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release.
    Plant Physiol., 2016. 171(3): p. 2101-11
    [PMID:27221617]
  4. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]