PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_08461
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family HSF
Protein Properties Length: 240aa    MW: 28163.2 Da    PI: 9.8348
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_08461genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.13.3e-34171092103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F+ k+y++++d++++++isw +n+nsfvvld+  f +++Lp +Fkhsnf+SFvRQLn+YgF+kv+ ++         weF+h+sF +g+ +ll++i 
    PEQU_08461  17 FVAKIYQMVSDPANDSIISWGRNSNSFVVLDPFGFCQNLLPLHFKHSNFSSFVRQLNTYGFRKVNPDH---------WEFAHPSFLRGQSQLLSRIA 104
                   9*****************************************************************99.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   rk++e
    PEQU_08461 105 RKRKE 109
                   *9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.1E-5113106IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.9E-3614106IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.56E-3314106IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.1E-171740IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.0E-2917106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-175567IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405680IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-176880IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MDIAGDCCGG EFAAPPFVAK IYQMVSDPAN DSIISWGRNS NSFVVLDPFG FCQNLLPLHF  60
KHSNFSSFVR QLNTYGFRKV NPDHWEFAHP SFLRGQSQLL SRIARKRKER DVEIDEDDRA  120
LVMELRRLKE EQRAIEDKLE RLSRRVMETE RRPRKMLQFL VRVFEDPQML GRLKGRAGIG  180
EGEGFGWEKK ERLRIDGEPP PPQPWERWFR VGFGGRWGRF WLGSVSYGFS LIFVFFFFSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-26110612129Heat shock factor protein 1
5d5v_B6e-26110612129Heat shock factor protein 1
5d5v_D6e-26110612129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104128RKRKERDVEIDEDDRALVMELRRLK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020587759.11e-175heat stress transcription factor C-2a-like
SwissprotQ6EUG42e-64HFC2A_ORYSJ; Heat stress transcription factor C-2a
TrEMBLA0A080YTS67e-69A0A080YTS6_WHEAT; Uncharacterized protein
STRINGLPERR02G08320.13e-67(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44713470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.13e-60heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]