PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_08344 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | LBD | ||||||||
Protein Properties | Length: 166aa MW: 18385.7 Da PI: 7.0688 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 141 | 3.8e-44 | 14 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC ++C++apyfp e+p+kf nvhk+FGasnv+kll++l +++reda++sl+yeA+ar++dPvyG+vg i+ lqqq++ l++el+++++ PEQU_08344 14 PCAACKFLRRKCMQGCIFAPYFPPEEPQKFFNVHKIFGASNVTKLLNELLPHQREDAVNSLAYEADARMKDPVYGCVGAISVLQQQVQLLQKELDAANA 112 7*********************************************************************************************99886 PP DUF260 100 e 100 + PEQU_08344 113 N 113 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.257 | 13 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.1E-43 | 14 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MSSYSSSSAS SNSPCAACKF LRRKCMQGCI FAPYFPPEEP QKFFNVHKIF GASNVTKLLN 60 ELLPHQREDA VNSLAYEADA RMKDPVYGCV GAISVLQQQV QLLQKELDAA NANLLKYACS 120 YCHPSAHAGH QQVLLPYHSS LQWSNNSDNE QMREKGGYVY GDVDGS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-65 | 5 | 120 | 2 | 117 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-65 | 5 | 120 | 2 | 117 | LOB family transfactor Ramosa2.1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00581 | DAP | Transfer from AT5G63090 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269|PubMed:11934861}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020572649.1 | 1e-122 | protein LATERAL ORGAN BOUNDARIES-like | ||||
Refseq | XP_020572651.1 | 1e-122 | protein LATERAL ORGAN BOUNDARIES-like | ||||
Refseq | XP_020572652.1 | 1e-122 | protein LATERAL ORGAN BOUNDARIES-like | ||||
Refseq | XP_020572653.1 | 1e-122 | protein LATERAL ORGAN BOUNDARIES-like | ||||
Refseq | XP_020572654.1 | 1e-122 | protein LATERAL ORGAN BOUNDARIES-like | ||||
Refseq | XP_020572655.1 | 1e-122 | protein LATERAL ORGAN BOUNDARIES-like | ||||
Refseq | XP_020594900.1 | 1e-122 | protein LATERAL ORGAN BOUNDARIES-like | ||||
Swissprot | Q9FML4 | 2e-66 | LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES | ||||
TrEMBL | A0A2I0VID4 | 1e-81 | A0A2I0VID4_9ASPA; Protein LATERAL ORGAN BOUNDARIES | ||||
STRING | XP_008464527.1 | 1e-69 | (Cucumis melo) | ||||
STRING | XP_004173060.1 | 1e-69 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8813 | 35 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63090.4 | 4e-59 | LBD family protein |
Publications ? help Back to Top | |||
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