PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_08294 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | NF-YB | ||||||||
Protein Properties | Length: 154aa MW: 17344.5 Da PI: 4.3632 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 64 | 3e-20 | 3 | 72 | 15 | 84 |
NF-YB 15 rimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplk 84 +i+k++lP + ++++d+++++ ec +efi +++sea++ c+re+++ti+++ +l al lGf +y+e + PEQU_08294 3 KIIKEMLPPDVRVARDTQDLLVECCVEFINLLSSEANEVCNREDKRTIAPEHVLKALEVLGFGEYIEDVY 72 89****************************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 6.93E-30 | 2 | 120 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 2.2E-32 | 3 | 121 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.9E-17 | 3 | 59 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MFKIIKEMLP PDVRVARDTQ DLLVECCVEF INLLSSEANE VCNREDKRTI APEHVLKALE 60 VLGFGEYIED VYSAYEQHKL ETLDSPKGVR YSGVEMTEEE AAAEQQRMFA EARARMNNGV 120 APQKEPEPDR GFAVPDRGFA VPDRGFDGVN ADHV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 4e-31 | 3 | 113 | 23 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020572549.1 | 1e-111 | protein Dr1 homolog isoform X1 | ||||
Swissprot | P49592 | 2e-68 | NC2B_ARATH; Protein Dr1 homolog | ||||
TrEMBL | A0A2I0VLJ8 | 8e-82 | A0A2I0VLJ8_9ASPA; Protein Dr1 like | ||||
STRING | XP_008807401.1 | 4e-75 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5720 | 35 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.4 | 4e-54 | nuclear factor Y, subunit B13 |
Publications ? help Back to Top | |||
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