PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_08240 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | ZF-HD | ||||||||
Protein Properties | Length: 257aa MW: 28200.6 Da PI: 8.9291 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 88.8 | 5.2e-28 | 33 | 84 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +++Y+eCl+NhAas Ggh++DGCgEfmp +a+++kCaACgCHR+FHRre e+ PEQU_08240 33 SLKYRECLRNHAASHGGHVLDGCGEFMPG-----SADTMKCAACGCHRSFHRREGES 84 579*************************6.....7899***************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 3.8E-24 | 34 | 81 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 8.4E-24 | 35 | 81 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 4.0E-15 | 35 | 80 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.731 | 36 | 81 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE pattern | PS00028 | 0 | 68 | 92 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF46689 | 8.64E-20 | 171 | 241 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-29 | 176 | 242 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.3E-27 | 180 | 236 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MRSSSPDLSL AAESGKGEGS NFRTTGIAGE PSSLKYRECL RNHAASHGGH VLDGCGEFMP 60 GSADTMKCAA CGCHRSFHRR EGESDHLFYR HHQHNGSNHS GGNRVAAGGR IPLLLPAPQL 120 APHQKHIHCF SPSPSAGMVA FGNTSGGTTT ESSSEELGLT PAGAMPGGFH MPPFVTPSSK 180 KRFRTKFTSE QKARMMDFAE RIGWRIQRQD EVDLDAFCAE VGVSRQVFKV WMHNNKHSIR 240 KQQEQQNREL QQPLQQP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-24 | 179 | 238 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020572665.1 | 0.0 | zinc-finger homeodomain protein 6-like | ||||
TrEMBL | A0A2I0VL92 | 1e-138 | A0A2I0VL92_9ASPA; ZF-HD homeobox protein | ||||
STRING | XP_008782488.1 | 2e-64 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP815 | 35 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 1e-41 | homeobox protein 31 |