PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_08172
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family GRAS
Protein Properties Length: 443aa    MW: 47962.4 Da    PI: 8.5916
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_08172genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS151.86.4e-47724262374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 ++lL   A a+++ +l++aq+l+  l+elasp+gd+++Rla+y ++AL++  ++s+s+  + l++++          +al  f++vs ++ f + +aN 
  PEQU_08172  72 EQLLNPLAAAIDAANLSRAQHLIYVLQELASPTGDANHRLAFYGLQALSRSFSSSSSSPLNYLSTEPR------LFRSALIKFHDVSAWFAFPNCLANA 164
                 689999***********************************************944443333333332......33455556***************** PP

        GRAS 101 aIleavege.......ervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvakrl 186
                 aIl+a++           +H++D ++s+GlQWp+L++aLa R     g+ ++++T+v+  + g   s+ +    g +L ++A++++++++ +       
  PEQU_08172 165 AILQAAACGragavrsGSLHVVDVGVSHGLQWPTLMEALARRGvglVGQGMVQLTVVEIGSGGpfgSAPAGYDFGPQLMRYAKSIDLNLRVER------ 257
                 ****987544544555778***********************97777899*******997766999*********************998886...... PP

        GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe.adhnsesFlerflealeyysalfdsleaklpreseerik 284
                       + r  ++E ++ +l+++  r+             + k++++++P++vv++e e ++ +++   ++f +  e  + ++ds+++ +    + r +
  PEQU_08172 258 ----GGMRRGVEKEIMVLCLQFRAGRVG----------FGFWKMMREMEPDLVVLTEMEeVEGGGGGGDKGFGKRAELLWRFLDSTNVAF----KGRDS 338
                 ....334466789999999999999987..........3699***************874777999********************8886....55556 PP

        GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.eesgslvlgWkdrpLvsvSaWr 374
                  Er +++ e+  ++  eg+e   + +  e+Wrer+e  GFk+  + e+a +  ++ll+k++++ ++++   +g++ l Wk++ + ++S W+
  PEQU_08172 339 EERTVVEGEAAGLLEEEGDE--GEGRGRERWRERMEGEGFKEEGFAEEAIEAGRALLKKYDGN-WEMKvGADGAVGLSWKGQIVSFCSLWK 426
                 66666666799*********..555566*********************************44.455513456666**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098525.12845406IPR005202Transcription factor GRAS
PfamPF035142.2E-4472426IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MAAKPEPLPE TPRSEIPKKR KLAARQTAGE LDEERKPQVN NGSRKVQGRG SLSNSGGGGG  60
VGGGSKEVRW AEQLLNPLAA AIDAANLSRA QHLIYVLQEL ASPTGDANHR LAFYGLQALS  120
RSFSSSSSSP LNYLSTEPRL FRSALIKFHD VSAWFAFPNC LANAAILQAA ACGRAGAVRS  180
GSLHVVDVGV SHGLQWPTLM EALARRGVGL VGQGMVQLTV VEIGSGGPFG SAPAGYDFGP  240
QLMRYAKSID LNLRVERGGM RRGVEKEIMV LCLQFRAGRV GFGFWKMMRE MEPDLVVLTE  300
MEEVEGGGGG GDKGFGKRAE LLWRFLDSTN VAFKGRDSEE RTVVEGEAAG LLEEEGDEGE  360
GRGRERWRER MEGEGFKEEG FAEEAIEAGR ALLKKYDGNW EMKVGADGAV GLSWKGQIVS  420
FCSLWKPTYK VTTSVFGGRA RRH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-286542881475Protein SHORT-ROOT
5b3h_B7e-296542827421Protein SHORT-ROOT
5b3h_E7e-296542827421Protein SHORT-ROOT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11120PRSEIPKKRK
25464SGGGGGVGGGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020587059.10.0nodulation-signaling pathway 1 protein-like
TrEMBLA0A3G2CI310.0A0A3G2CI31_CYMEN; Nodulation-signaling pathway 1 protein-like
STRINGXP_008797335.11e-135(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61352854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.16e-51GRAS family protein