PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_07802 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | Trihelix | ||||||||
Protein Properties | Length: 341aa MW: 38667.6 Da PI: 6.5266 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 71.4 | 1.6e-22 | 2 | 106 | 1 | 86 |
trihelix 1 rWtkqevlaLiearr.................emeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.t 72 +Wt+++v++L+ ++ k lkk++W++vs+ m+e+gf +sp+qC++k+++lnkryk+++e +k+ PEQU_07802 2 KWTDSMVRLLVSVVHsagddiagvecsdqyqkG--------KkspsstsmqLKKGKWKSVSRSMMEKGFYVSPQQCEDKFNDLNKRYKRVNELLGKGmG 92 7**************777777777444444330........2445555555**********************************************66 PP trihelix 73 sessstcpyfdqle 86 ++++++ +++d+++ PEQU_07802 93 CKVVENPALLDSMD 106 ************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.4E-18 | 2 | 132 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010629 | Biological Process | negative regulation of gene expression | ||||
GO:1900037 | Biological Process | regulation of cellular response to hypoxia | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MKWTDSMVRL LVSVVHSAGD DIAGVECSDQ YQKGKKSPSS TSMQLKKGKW KSVSRSMMEK 60 GFYVSPQQCE DKFNDLNKRY KRVNELLGKG MGCKVVENPA LLDSMDHLSQ KAREEARKLL 120 SSKHLFFREM CAYHNNCPSA SAALRPDHSP SLSPATIKIQ KKGGGGGGLC TVEEESRHLC 180 QEDEEEEEEE DDYNEEESED EDDGSLGVKR KAALSPAAMS PLSLSLCSPS GSSSAQGEQQ 240 QREWVRMKLA ELEEKRVIYQ KQALQLEKQR FKWLRFSSNK EREMEKMRLW NERLRLENER 300 MLLLLQQKEI RLFESAGKAG GEANGGEIAS YQFPAVDRNQ N |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020581387.1 | 0.0 | uncharacterized protein LOC110025313 | ||||
TrEMBL | A0A2I0WV85 | 1e-150 | A0A2I0WV85_9ASPA; Uncharacterized protein | ||||
STRING | EOY08079 | 9e-84 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11944 | 31 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10040.1 | 2e-52 | sequence-specific DNA binding transcription factors |